Wall clock time and date at job start Mon Mar 30 2020 02:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00082 * 2 1 4 4 H 1.48495 * 109.47098 * 270.00073 * 3 2 1 5 5 H 1.48509 * 109.47042 * 29.99715 * 3 2 1 6 6 H 1.48497 * 109.47342 * 149.99429 * 3 2 1 7 7 C 1.37873 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00502 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99949 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.64170 * 300.00132 * 9 7 2 11 11 C 1.53024 * 109.64043 * 60.42265 * 9 7 2 12 12 C 1.50060 * 110.15148 * 70.45933 * 11 9 7 13 13 C 1.29449 * 124.07617 * 17.13192 * 12 11 9 14 14 C 1.50075 * 124.07160 * 359.55277 * 13 12 11 15 15 C 1.53005 * 110.15458 * 17.09335 * 14 13 12 16 16 H 1.09003 * 109.62513 * 70.27844 * 15 14 13 17 17 C 1.53002 * 109.64763 * 190.89865 * 15 14 13 18 18 Cl 1.80296 * 109.46914 * 298.96281 * 17 15 14 19 19 H 0.96999 * 119.99847 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.35798 * 190.67125 * 11 9 7 21 21 H 1.09006 * 109.35833 * 310.38843 * 11 9 7 22 22 H 1.07998 * 117.96914 * 197.15608 * 12 11 9 23 23 H 1.07994 * 117.96444 * 179.53652 * 13 12 11 24 24 H 1.09001 * 109.35521 * 137.32070 * 14 13 12 25 25 H 1.09002 * 109.35737 * 257.03814 * 14 13 12 26 26 H 1.09003 * 109.46978 * 58.96048 * 17 15 14 27 27 H 1.08994 * 109.47432 * 178.96821 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6229 -2.5596 0.8893 11 6 0.3783 -2.5892 -1.2532 12 6 1.2378 -2.7736 -2.4693 13 6 2.4733 -3.1582 -2.4326 14 6 3.2215 -3.4641 -1.1682 15 6 2.2408 -3.6710 -0.0122 16 1 1.6994 -4.6063 -0.1544 17 6 3.0069 -3.7115 1.3115 18 17 4.1685 -5.0902 1.2916 19 1 -0.4850 0.8400 -0.0004 20 1 -0.3021 -3.4356 -1.1598 21 1 -0.1998 -1.6709 -1.3577 22 1 0.7986 -2.5727 -3.4352 23 1 2.9982 -3.2659 -3.3703 24 1 3.8120 -4.3696 -1.3078 25 1 3.8856 -2.6328 -0.9312 26 1 3.5536 -2.7777 1.4436 27 1 2.3040 -3.8406 2.1345 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212047275.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:53 Heat of formation + Delta-G solvation = -17.326776 kcal Electronic energy + Delta-G solvation = -11274.519605 eV Core-core repulsion = 9250.431699 eV Total energy + Delta-G solvation = -2024.087906 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.066 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.03837 -35.25630 -32.60270 -31.49319 -29.21614 -25.98561 -24.60510 -21.58065 -19.85839 -17.63502 -15.23834 -15.04457 -14.64539 -13.79337 -13.64990 -12.92404 -12.36398 -12.14008 -11.64299 -11.59520 -11.13649 -10.98603 -10.84882 -10.55405 -10.09121 -10.02264 -9.76086 -9.20977 -9.02596 -8.70240 -8.40690 -7.84129 -6.02337 -4.07522 2.94443 3.28609 3.35754 3.37204 3.38239 4.41349 5.28845 5.50600 5.56364 5.88659 5.99349 6.25594 6.34620 6.44041 6.61057 6.68952 6.83093 6.95943 6.99760 7.22229 7.50802 7.62481 7.91608 7.96712 8.14120 8.40368 8.93362 9.57083 11.03677 Molecular weight = 200.07amu Principal moments of inertia in cm(-1) A = 0.034755 B = 0.013114 C = 0.011252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.438433 B = 2134.672790 C = 2487.922857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.502 4.502 8 H 0.058 0.942 9 C 0.055 3.945 10 H 0.029 0.971 11 C -0.090 4.090 12 C -0.121 4.121 13 C -0.173 4.173 14 C -0.065 4.065 15 C -0.088 4.088 16 H 0.057 0.943 17 C -0.005 4.005 18 Cl -0.227 7.227 19 H 0.260 0.740 20 H 0.032 0.968 21 H 0.104 0.896 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 -5.370 -0.354 6.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.540 4.540 8 H 0.076 0.924 9 C 0.036 3.964 10 H 0.048 0.952 11 C -0.127 4.127 12 C -0.139 4.139 13 C -0.191 4.191 14 C -0.102 4.102 15 C -0.107 4.107 16 H 0.075 0.925 17 C -0.067 4.067 18 Cl -0.201 7.201 19 H 0.070 0.930 20 H 0.050 0.950 21 H 0.122 0.878 22 H 0.096 0.904 23 H 0.099 0.901 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.118 0.882 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.497 -5.339 -0.348 6.392 hybrid contribution 0.475 1.023 -0.194 1.145 sum 3.973 -4.316 -0.542 5.891 Atomic orbital electron populations 1.69851 1.05856 1.26403 1.50976 1.24923 0.94781 0.98941 0.95239 0.86677 0.79916 0.83843 0.78095 1.20786 1.21350 1.19950 1.21147 0.92818 0.90159 1.49920 0.92357 1.18765 0.92147 0.91256 0.94205 0.95244 1.20592 0.97389 1.01232 0.93509 1.22051 0.96152 0.97291 0.98402 1.21682 0.96177 1.04177 0.97091 1.20275 0.97191 0.99983 0.92770 1.21543 0.97062 1.00233 0.91855 0.92484 1.24655 0.92475 0.88686 1.00932 1.98655 1.67533 1.54701 1.99226 0.93028 0.95008 0.87779 0.90432 0.90096 0.93082 0.90948 0.88230 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.47 11.34 55.43 0.63 -23.84 15 2 C 0.06 1.64 5.27 -17.82 -0.09 1.54 15 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.50 -12.73 6.79 -34.44 -0.23 -12.96 15 8 H 0.06 1.47 5.77 -52.49 -0.30 1.17 15 9 C 0.05 1.28 2.09 -91.55 -0.19 1.08 15 10 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 11 C -0.09 -2.06 5.43 -28.18 -0.15 -2.21 15 12 C -0.12 -2.54 9.53 -35.91 -0.34 -2.88 15 13 C -0.17 -3.43 9.62 -35.90 -0.35 -3.78 15 14 C -0.07 -1.26 4.52 -28.18 -0.13 -1.39 15 15 C -0.09 -1.74 2.14 -90.41 -0.19 -1.93 15 16 H 0.06 1.10 8.12 -51.93 -0.42 0.68 15 17 C -0.01 -0.09 5.95 37.16 0.22 0.13 15 18 Cl -0.23 -3.75 28.13 -51.86 -1.46 -5.21 15 19 H 0.26 6.88 8.31 -40.82 -0.34 6.54 15 20 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.10 2.68 5.91 -51.93 -0.31 2.37 15 22 H 0.08 1.50 8.06 -52.49 -0.42 1.08 15 23 H 0.08 1.44 8.06 -52.49 -0.42 1.02 15 24 H 0.05 0.91 7.54 -51.93 -0.39 0.52 15 25 H 0.07 1.48 6.55 -51.93 -0.34 1.14 15 26 H 0.10 1.85 7.16 -51.93 -0.37 1.48 15 27 H 0.08 1.42 8.14 -51.93 -0.42 0.99 15 LS Contribution 231.57 15.07 3.49 3.49 Total: -1.00 -26.01 231.57 -7.20 -33.21 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -3.38 Total: -0.98 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -1.46 Total: -22.40 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.63 Total: -23.84 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 17 Polarization: -3.75 SS G_CDS: -1.46 Total: -5.21 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -26.01 -7.20 -33.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212047275.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.886 kcal (2) G-P(sol) polarization free energy of solvation -26.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds