Wall clock time and date at job start Mon Mar 30 2020 02:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00082 * 2 1 4 4 H 1.48495 * 109.47098 * 270.00073 * 3 2 1 5 5 H 1.48509 * 109.47042 * 29.99715 * 3 2 1 6 6 H 1.48497 * 109.47342 * 149.99429 * 3 2 1 7 7 C 1.37873 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00502 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99949 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.64170 * 300.00132 * 9 7 2 11 11 C 1.53024 * 109.64043 * 60.42265 * 9 7 2 12 12 C 1.50060 * 110.15148 * 70.45933 * 11 9 7 13 13 C 1.29449 * 124.07617 * 17.13192 * 12 11 9 14 14 C 1.50075 * 124.07160 * 359.55277 * 13 12 11 15 15 C 1.53005 * 110.15458 * 17.09335 * 14 13 12 16 16 H 1.09003 * 109.62513 * 70.27844 * 15 14 13 17 17 C 1.53002 * 109.64763 * 190.89865 * 15 14 13 18 18 Cl 1.80296 * 109.46914 * 298.96281 * 17 15 14 19 19 H 0.96999 * 119.99847 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.35798 * 190.67125 * 11 9 7 21 21 H 1.09006 * 109.35833 * 310.38843 * 11 9 7 22 22 H 1.07998 * 117.96914 * 197.15608 * 12 11 9 23 23 H 1.07994 * 117.96444 * 179.53652 * 13 12 11 24 24 H 1.09001 * 109.35521 * 137.32070 * 14 13 12 25 25 H 1.09002 * 109.35737 * 257.03814 * 14 13 12 26 26 H 1.09003 * 109.46978 * 58.96048 * 17 15 14 27 27 H 1.08994 * 109.47432 * 178.96821 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6229 -2.5596 0.8893 11 6 0.3783 -2.5892 -1.2532 12 6 1.2378 -2.7736 -2.4693 13 6 2.4733 -3.1582 -2.4326 14 6 3.2215 -3.4641 -1.1682 15 6 2.2408 -3.6710 -0.0122 16 1 1.6994 -4.6063 -0.1544 17 6 3.0069 -3.7115 1.3115 18 17 4.1685 -5.0902 1.2916 19 1 -0.4850 0.8400 -0.0004 20 1 -0.3021 -3.4356 -1.1598 21 1 -0.1998 -1.6709 -1.3577 22 1 0.7986 -2.5727 -3.4352 23 1 2.9982 -3.2659 -3.3703 24 1 3.8120 -4.3696 -1.3078 25 1 3.8856 -2.6328 -0.9312 26 1 3.5536 -2.7777 1.4436 27 1 2.3040 -3.8406 2.1345 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212047275.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:49 Heat of formation + Delta-G solvation = -29.655797 kcal Electronic energy + Delta-G solvation = -11275.054232 eV Core-core repulsion = 9250.431699 eV Total energy + Delta-G solvation = -2024.622533 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.066 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.71166 -36.66548 -34.53299 -33.08132 -30.98891 -27.71449 -26.36508 -23.31378 -21.51387 -19.43245 -17.03870 -16.80155 -16.43269 -15.37490 -15.20362 -14.66124 -13.97777 -13.70963 -13.43143 -13.26750 -12.87058 -12.75964 -12.60938 -12.29819 -11.98878 -11.49895 -11.19441 -10.92456 -10.71979 -10.51984 -10.33310 -9.49718 -8.02527 -6.12047 1.42196 1.45682 1.51356 1.52954 1.75910 2.47381 3.27432 3.97435 4.04247 4.32879 4.46499 4.68109 4.80571 4.85551 5.00319 5.07303 5.10723 5.28708 5.36883 5.50382 5.67295 5.75644 6.07311 6.18370 6.44371 6.47632 6.96212 7.54623 9.02529 Molecular weight = 200.07amu Principal moments of inertia in cm(-1) A = 0.034755 B = 0.013114 C = 0.011252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.438433 B = 2134.672790 C = 2487.922857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.939 3.061 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.052 3.948 10 H 0.002 0.998 11 C -0.089 4.089 12 C -0.143 4.143 13 C -0.165 4.165 14 C -0.065 4.065 15 C -0.082 4.082 16 H 0.063 0.937 17 C -0.001 4.001 18 Cl -0.209 7.209 19 H 0.257 0.743 20 H 0.038 0.962 21 H 0.072 0.928 22 H 0.091 0.909 23 H 0.108 0.892 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.020 -6.005 -0.709 7.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.767 3.233 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.033 3.967 10 H 0.021 0.979 11 C -0.126 4.126 12 C -0.161 4.161 13 C -0.183 4.183 14 C -0.102 4.102 15 C -0.101 4.101 16 H 0.081 0.919 17 C -0.063 4.063 18 Cl -0.183 7.183 19 H 0.066 0.934 20 H 0.057 0.943 21 H 0.090 0.910 22 H 0.109 0.891 23 H 0.126 0.874 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.110 0.890 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.971 -5.983 -0.702 7.810 hybrid contribution 0.042 1.154 -0.072 1.157 sum 5.013 -4.830 -0.774 7.004 Atomic orbital electron populations 1.69987 1.07023 1.26703 1.52323 1.25583 0.95411 1.01781 0.95603 0.85835 0.79050 0.80650 0.77813 1.20910 1.21602 1.19121 1.21403 0.92935 0.90975 1.48501 0.92204 1.18707 0.92598 0.92155 0.93238 0.97944 1.20453 0.97642 0.99980 0.94536 1.22062 0.96774 0.99171 0.98097 1.21987 0.95693 1.02229 0.98436 1.20302 0.96956 1.00579 0.92318 1.21413 0.96640 0.98767 0.93233 0.91907 1.24439 0.92691 0.89087 1.00129 1.98658 1.66791 1.53678 1.99187 0.93378 0.94340 0.90993 0.89088 0.87437 0.90983 0.91779 0.89008 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.33 11.34 21.45 0.24 -51.09 15 2 C 0.01 0.74 5.27 84.65 0.45 1.18 15 3 Si 0.94 42.41 29.54 68.60 2.03 44.44 15 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 15 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 7 C -0.50 -25.14 6.79 25.60 0.17 -24.96 15 8 H 0.06 2.95 5.77 -2.91 -0.02 2.93 15 9 C 0.05 2.40 2.09 -11.40 -0.02 2.37 15 10 H 0.00 0.12 8.14 -2.39 -0.02 0.11 15 11 C -0.09 -4.07 5.43 29.66 0.16 -3.91 15 12 C -0.14 -5.81 9.53 27.03 0.26 -5.56 15 13 C -0.17 -6.13 9.62 27.03 0.26 -5.87 15 14 C -0.06 -2.34 4.52 29.65 0.13 -2.20 15 15 C -0.08 -3.09 2.14 -10.66 -0.02 -3.11 15 16 H 0.06 2.30 8.12 -2.39 -0.02 2.28 15 17 C 0.00 -0.03 5.95 71.98 0.43 0.39 15 18 Cl -0.21 -6.37 28.13 -2.72 -0.08 -6.45 15 19 H 0.26 13.87 8.31 -92.71 -0.77 13.10 15 20 H 0.04 1.65 8.14 -2.39 -0.02 1.63 15 21 H 0.07 3.79 5.91 -2.38 -0.01 3.77 15 22 H 0.09 3.40 8.06 -2.91 -0.02 3.38 15 23 H 0.11 3.42 8.06 -2.91 -0.02 3.40 15 24 H 0.07 2.31 7.54 -2.39 -0.02 2.30 15 25 H 0.06 2.46 6.55 -2.39 -0.02 2.44 15 26 H 0.09 3.27 7.16 -2.39 -0.02 3.25 15 27 H 0.09 2.94 8.14 -2.39 -0.02 2.93 15 Total: -1.00 -53.73 231.57 5.15 -48.58 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.14 Total: 6.19 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 1.81 Total: -41.67 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.24 Total: -51.09 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 17 Polarization: -6.37 SS G_CDS: -0.08 Total: -6.45 kcal Total: -53.73 5.15 -48.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212047275.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.923 kcal (2) G-P(sol) polarization free energy of solvation -53.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds