Wall clock time and date at job start Mon Mar 30 2020 02:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86799 * 120.00172 * 2 1 4 4 H 1.48502 * 109.47567 * 274.97990 * 3 2 1 5 5 H 1.48505 * 109.47182 * 34.98316 * 3 2 1 6 6 H 1.48503 * 109.47308 * 154.97889 * 3 2 1 7 7 C 1.40259 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99914 * 173.99656 * 7 2 1 9 9 C 1.40545 * 119.99902 * 354.28014 * 7 2 1 10 10 N 1.33300 * 127.04375 * 4.99586 * 9 7 2 11 11 N 1.28798 * 107.72168 * 179.89995 * 10 9 7 12 12 N 1.28582 * 110.10880 * 0.38361 * 11 10 9 13 13 N 1.29001 * 109.45463 * 359.75741 * 12 11 10 14 14 C 1.46495 * 126.60081 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47276 * 269.98188 * 14 13 12 16 16 C 1.53005 * 109.47369 * 179.97438 * 15 14 13 17 17 F 1.39894 * 109.47121 * 179.97438 * 16 15 14 18 18 H 0.97003 * 119.99570 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47049 * 29.98188 * 14 13 12 20 20 H 1.08997 * 109.47040 * 149.98054 * 14 13 12 21 21 H 1.09001 * 109.47081 * 299.99980 * 15 14 13 22 22 H 1.09002 * 109.47642 * 59.99842 * 15 14 13 23 23 H 1.09001 * 109.47011 * 300.00034 * 16 15 14 24 24 H 1.09002 * 109.46859 * 59.99373 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3828 2.1072 -1.3948 5 1 1.4946 2.6200 0.8027 6 1 3.5867 1.4120 0.5922 7 6 2.0077 -1.2147 -0.0005 8 1 3.0833 -1.2172 -0.0984 9 6 1.3102 -2.4288 0.1202 10 7 -0.0119 -2.5959 0.1501 11 7 -0.2452 -3.8570 0.2681 12 7 0.8622 -4.5082 0.3236 13 7 1.8503 -3.6834 0.2375 14 6 3.2754 -4.0221 0.2603 15 6 3.7815 -4.0017 1.7040 16 6 5.2697 -4.3562 1.7279 17 9 5.7326 -4.3369 3.0479 18 1 -0.4850 0.8401 -0.0004 19 1 3.4191 -5.0171 -0.1610 20 1 3.8314 -3.2938 -0.3300 21 1 3.6378 -3.0067 2.1253 22 1 3.2254 -4.7300 2.2944 23 1 5.4130 -5.3513 1.3067 24 1 5.8261 -3.6282 1.1374 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212370903.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:39 Heat of formation + Delta-G solvation = 14.398878 kcal Electronic energy + Delta-G solvation = -12540.222701 eV Core-core repulsion = 10017.926555 eV Total energy + Delta-G solvation = -2522.296146 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 200.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.56620 -43.63644 -36.79054 -35.83820 -33.18391 -32.33082 -28.51272 -27.13359 -23.66002 -23.47016 -22.12753 -19.47363 -18.02113 -17.27799 -17.11595 -16.83831 -16.17556 -15.63404 -15.30413 -15.09065 -13.86558 -13.50708 -13.40253 -12.97499 -12.90934 -12.43025 -12.21554 -12.05584 -11.91507 -11.59110 -11.50161 -10.98682 -10.90149 -10.29800 -8.65398 -6.86204 1.03026 1.44786 1.55491 1.63272 1.97244 2.18782 2.24479 3.15634 3.65066 3.70021 3.90719 4.12738 4.21521 4.37424 4.60384 4.71509 4.81609 4.97139 5.14912 5.17384 5.75070 5.81324 6.12343 6.61791 6.67546 8.32145 8.71587 Molecular weight = 200.08amu Principal moments of inertia in cm(-1) A = 0.027504 B = 0.012652 C = 0.009096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.773818 B = 2212.515114 C = 3077.451230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.030 3.970 3 Si 1.009 2.991 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.241 1.241 7 C -0.453 4.453 8 H 0.121 0.879 9 C 0.297 3.703 10 N -0.399 5.399 11 N -0.139 5.139 12 N -0.190 5.190 13 N -0.393 5.393 14 C 0.137 3.863 15 C -0.162 4.162 16 C 0.074 3.926 17 F -0.235 7.235 18 H 0.291 0.709 19 H 0.114 0.886 20 H 0.117 0.883 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.106 0.894 24 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.558 -0.083 0.139 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.193 4.193 3 Si 0.827 3.173 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.164 1.164 7 C -0.495 4.495 8 H 0.139 0.861 9 C 0.049 3.951 10 N -0.260 5.260 11 N -0.134 5.134 12 N -0.177 5.177 13 N -0.199 5.199 14 C 0.015 3.985 15 C -0.202 4.202 16 C 0.018 3.982 17 F -0.216 7.216 18 H 0.101 0.899 19 H 0.132 0.868 20 H 0.136 0.864 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.124 0.876 24 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.147 -0.855 0.250 12.180 hybrid contribution 0.531 0.903 0.137 1.056 sum 12.678 0.049 0.387 12.684 Atomic orbital electron populations 1.70048 1.09721 1.30954 1.29668 1.27133 0.95654 1.05131 0.91413 0.84788 0.79040 0.73876 0.79576 1.18278 1.19847 1.16382 1.19038 0.96001 0.86766 1.47688 0.86106 1.23085 0.88834 0.87870 0.95341 1.76070 1.12459 1.05882 1.31560 1.77822 1.18916 1.01253 1.15423 1.77935 0.92132 1.20764 1.26886 1.48510 1.08196 1.04766 1.58420 1.21726 0.74185 1.04679 0.97875 1.22440 0.97768 1.03009 0.96934 1.21998 0.91766 1.05787 0.78607 1.92729 1.89991 1.98326 1.40573 0.89866 0.86817 0.86445 0.91860 0.92223 0.87619 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -41.67 12.01 21.88 0.26 -41.41 14 2 C 0.03 1.41 5.49 85.36 0.47 1.88 14 3 Si 1.01 34.18 29.57 68.60 2.03 36.21 14 4 H -0.26 -8.35 7.11 99.48 0.71 -7.64 14 5 H -0.27 -9.23 7.11 99.48 0.71 -8.52 14 6 H -0.24 -7.39 7.11 99.48 0.71 -6.68 14 7 C -0.45 -22.08 9.07 23.32 0.21 -21.87 14 8 H 0.12 4.93 7.25 -2.91 -0.02 4.91 14 9 C 0.30 16.18 7.63 133.78 1.02 17.20 14 10 N -0.40 -24.62 10.73 -55.19 -0.59 -25.21 14 11 N -0.14 -8.27 13.38 37.02 0.50 -7.77 14 12 N -0.19 -10.00 13.25 37.02 0.49 -9.51 14 13 N -0.39 -18.47 3.42 -344.80 -1.18 -19.65 14 14 C 0.14 4.25 6.23 86.38 0.54 4.79 14 15 C -0.16 -4.60 5.99 30.59 0.18 -4.42 14 16 C 0.07 1.43 7.55 71.98 0.54 1.97 14 17 F -0.23 -6.07 17.36 44.97 0.78 -5.29 14 18 H 0.29 13.91 8.29 -92.71 -0.77 13.14 14 19 H 0.11 2.89 8.14 -2.39 -0.02 2.87 14 20 H 0.12 3.06 7.44 -2.39 -0.02 3.05 14 21 H 0.06 2.08 8.14 -2.39 -0.02 2.06 14 22 H 0.06 1.91 8.14 -2.39 -0.02 1.89 14 23 H 0.11 1.47 8.14 -2.39 -0.02 1.45 14 24 H 0.11 1.51 8.14 -2.39 -0.02 1.49 14 Total: -1.00 -71.53 226.70 6.47 -65.07 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.22 Total: 8.01 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 2.97 Total: -0.44 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -0.52 Total: -103.55 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.78 Total: -5.29 kcal Atomic # 14 Polarization: 34.18 SS G_CDS: 2.03 Total: 36.21 kcal Total: -71.53 6.47 -65.07 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212370903.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.464 kcal (2) G-P(sol) polarization free energy of solvation -71.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds