Wall clock time and date at job start Mon Mar 30 2020 02:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86804 * 119.99834 * 2 1 4 4 H 1.48501 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46948 * 299.99609 * 3 2 1 6 6 H 1.48498 * 109.47270 * 59.99636 * 3 2 1 7 7 C 1.40072 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00213 * 197.50735 * 7 2 1 9 9 C 1.41200 * 119.99745 * 17.50070 * 7 2 1 10 10 C 1.41658 * 120.39321 * 203.70898 * 9 7 2 11 11 N 1.30543 * 121.49153 * 179.72679 * 10 9 7 12 12 C 1.33852 * 121.78710 * 0.27218 * 11 10 9 13 13 C 1.40363 * 121.46836 * 180.02562 * 12 11 10 14 14 N 1.31303 * 120.11975 * 179.97438 * 13 12 11 15 15 C 1.32473 * 122.92611 * 0.02562 * 14 13 12 16 16 C 1.36349 * 121.66820 * 359.97438 * 15 14 13 17 17 C 1.40808 * 118.61638 * 359.97438 * 16 15 14 18 18 C 1.40036 * 122.05191 * 180.02562 * 17 16 15 19 19 H 0.96999 * 119.99512 * 0.02562 * 1 2 3 20 20 H 1.08003 * 119.25116 * 0.02562 * 10 9 7 21 21 H 1.07996 * 119.93732 * 0.02562 * 13 12 11 22 22 H 1.07999 * 119.16774 * 179.97438 * 15 14 13 23 23 H 1.07996 * 120.68853 * 179.97438 * 16 15 14 24 24 H 1.07999 * 121.14638 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7015 1.3465 0.0006 5 1 1.8827 2.3964 -1.2126 6 1 1.8827 2.3965 1.2124 7 6 2.0079 -1.2130 0.0005 8 1 3.0504 -1.2346 0.2819 9 6 1.3509 -2.4077 -0.3667 10 6 1.8360 -3.6600 0.0840 11 7 1.2424 -4.7772 -0.2380 12 6 0.1511 -4.7979 -1.0128 13 6 -0.4821 -6.0031 -1.3545 14 7 -1.5517 -5.9925 -2.1161 15 6 -2.0835 -4.8779 -2.5953 16 6 -1.5466 -3.6543 -2.3238 17 6 -0.3981 -3.5869 -1.5119 18 6 0.2119 -2.3689 -1.1871 19 1 -0.4849 0.8401 -0.0004 20 1 2.7140 -3.6909 0.7122 21 1 -0.0894 -6.9406 -0.9897 22 1 -2.9646 -4.9399 -3.2168 23 1 -1.9929 -2.7556 -2.7232 24 1 -0.1824 -1.4319 -1.5519 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213940651.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:44 Heat of formation + Delta-G solvation = 26.072320 kcal Electronic energy + Delta-G solvation = -11733.860744 eV Core-core repulsion = 9610.547270 eV Total energy + Delta-G solvation = -2123.313474 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.064 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.38003 -38.57392 -36.08089 -33.77213 -32.22637 -30.87889 -27.90800 -25.22455 -24.02811 -22.96457 -20.00727 -18.66025 -17.96457 -17.38587 -16.70056 -15.58953 -15.27625 -15.06353 -14.81289 -13.91019 -13.76301 -13.56566 -13.29013 -12.95491 -12.85546 -12.35565 -11.86328 -11.40580 -11.07450 -10.48718 -10.12809 -9.79483 -9.11623 -8.85051 -6.54795 -0.30382 0.28587 1.30414 1.40188 1.52016 1.56746 2.12604 2.23785 2.90580 3.60657 3.66434 3.80362 4.06990 4.31037 4.40467 4.54616 4.76912 4.85617 5.00790 5.11586 5.28969 5.52078 5.75021 5.82124 5.95277 6.37497 6.56282 6.61818 7.13424 7.36492 8.08905 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.059888 B = 0.010096 C = 0.008835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.427093 B = 2772.742973 C = 3168.550913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.031 3.969 3 Si 0.993 3.007 4 H -0.248 1.248 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.443 4.443 8 H 0.105 0.895 9 C 0.033 3.967 10 C 0.075 3.925 11 N -0.469 5.469 12 C -0.058 4.058 13 C 0.171 3.829 14 N -0.537 5.537 15 C 0.069 3.931 16 C -0.194 4.194 17 C -0.049 4.049 18 C -0.216 4.216 19 H 0.297 0.703 20 H 0.167 0.833 21 H 0.173 0.827 22 H 0.175 0.825 23 H 0.134 0.866 24 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.006 1.451 -1.343 2.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.188 4.188 3 Si 0.812 3.188 4 H -0.170 1.170 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.472 4.472 8 H 0.123 0.877 9 C 0.028 3.972 10 C -0.105 4.105 11 N -0.177 5.177 12 C -0.179 4.179 13 C 0.000 4.000 14 N -0.248 5.248 15 C -0.072 4.072 16 C -0.215 4.215 17 C -0.055 4.055 18 C -0.242 4.242 19 H 0.108 0.892 20 H 0.184 0.816 21 H 0.190 0.810 22 H 0.192 0.808 23 H 0.151 0.849 24 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.464 -0.028 -1.405 1.480 hybrid contribution 0.165 2.406 0.013 2.411 sum 0.629 2.378 -1.393 2.827 Atomic orbital electron populations 1.69830 1.09633 1.31725 1.30886 1.27053 0.95507 1.05351 0.90938 0.84971 0.79779 0.75008 0.78995 1.17042 1.19119 1.18866 1.20176 0.99013 0.91267 1.36725 0.87713 1.18945 0.93216 0.94524 0.90543 1.23556 1.00234 0.87596 0.99088 1.67395 1.07655 1.31076 1.11562 1.19739 0.98125 0.94604 1.05480 1.22941 0.89615 0.96214 0.91188 1.67434 1.12371 1.31658 1.13376 1.22395 0.99506 0.87318 0.97991 1.21928 0.97355 0.99911 1.02349 1.19087 0.95601 0.94661 0.96178 1.21444 1.02235 0.95402 1.05128 0.89170 0.81623 0.81008 0.80751 0.84857 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.03 10.93 21.85 0.24 -37.79 14 2 C 0.03 1.37 5.17 85.30 0.44 1.81 14 3 Si 0.99 33.21 29.59 68.60 2.03 35.24 14 4 H -0.25 -7.89 7.11 99.48 0.71 -7.18 14 5 H -0.27 -8.77 7.11 99.48 0.71 -8.07 14 6 H -0.26 -8.52 7.11 99.48 0.71 -7.81 14 7 C -0.44 -20.92 9.07 23.44 0.21 -20.71 14 8 H 0.10 4.47 7.91 -2.91 -0.02 4.45 14 9 C 0.03 1.69 5.59 -21.17 -0.12 1.57 14 10 C 0.08 3.50 10.92 85.73 0.94 4.43 14 11 N -0.47 -22.27 10.31 -186.86 -1.93 -24.20 14 12 C -0.06 -2.80 6.62 40.29 0.27 -2.54 14 13 C 0.17 7.18 11.23 85.29 0.96 8.14 14 14 N -0.54 -21.85 10.28 -195.51 -2.01 -23.86 14 15 C 0.07 2.64 11.08 84.16 0.93 3.58 14 16 C -0.19 -8.25 9.89 22.46 0.22 -8.03 14 17 C -0.05 -2.42 5.74 -21.27 -0.12 -2.54 14 18 C -0.22 -11.21 8.60 23.24 0.20 -11.01 14 19 H 0.30 12.62 8.29 -92.71 -0.77 11.85 14 20 H 0.17 6.55 8.06 -2.91 -0.02 6.53 14 21 H 0.17 6.19 8.06 -2.91 -0.02 6.17 14 22 H 0.18 5.14 8.06 -2.91 -0.02 5.12 14 23 H 0.13 5.09 8.06 -2.91 -0.02 5.07 14 24 H 0.12 6.30 6.20 -2.91 -0.02 6.28 14 Total: -1.00 -56.97 220.98 3.48 -53.49 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 1.22 Total: 22.41 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 3.93 Total: -25.29 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -3.70 Total: -85.85 kcal Atomic # 14 Polarization: 33.21 SS G_CDS: 2.03 Total: 35.24 kcal Total: -56.97 3.48 -53.49 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213940651.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.560 kcal (2) G-P(sol) polarization free energy of solvation -56.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds