Wall clock time and date at job start Mon Mar 30 2020 02:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48500 * 109.47057 * 270.00114 * 3 2 1 5 5 H 1.48499 * 109.47270 * 30.00354 * 3 2 1 6 6 H 1.48502 * 109.46748 * 150.00338 * 3 2 1 7 7 C 1.40244 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00051 * 194.73006 * 7 2 1 9 9 C 1.40456 * 119.99954 * 14.72732 * 7 2 1 10 10 C 1.40823 * 121.31812 * 24.42961 * 9 7 2 11 11 N 1.31750 * 121.17119 * 179.97438 * 10 9 7 12 12 C 1.31548 * 123.83452 * 0.06781 * 11 10 9 13 13 C 1.40374 * 121.01339 * 359.90776 * 12 11 10 14 14 C 1.40429 * 123.00608 * 180.02562 * 13 12 11 15 15 C 1.36606 * 118.48052 * 180.27556 * 14 13 12 16 16 N 1.32349 * 121.91902 * 359.51305 * 15 14 13 17 17 C 1.31734 * 122.67725 * 0.48836 * 16 15 14 18 18 C 1.39191 * 119.71986 * 359.76522 * 17 16 15 19 19 H 0.97003 * 120.00539 * 359.97438 * 1 2 3 20 20 H 1.07999 * 119.40937 * 359.97438 * 10 9 7 21 21 H 1.07997 * 119.49235 * 179.97438 * 12 11 10 22 22 H 1.07998 * 120.76286 * 359.97438 * 14 13 12 23 23 H 1.07993 * 119.04142 * 179.74976 * 15 14 13 24 24 H 1.08003 * 120.14144 * 179.79798 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4381 2.6527 0.7001 6 1 3.5383 1.4401 0.7000 7 6 2.0080 -1.2145 -0.0005 8 1 3.0613 -1.2300 0.2373 9 6 1.3403 -2.4108 -0.3103 10 6 0.1689 -2.4141 -1.0919 11 7 -0.4548 -3.5380 -1.3811 12 6 -0.0528 -4.7236 -0.9772 13 6 1.1013 -4.8670 -0.1911 14 6 1.5684 -6.1113 0.2623 15 6 2.6996 -6.1431 1.0274 16 7 3.3641 -5.0420 1.3401 17 6 2.9808 -3.8444 0.9475 18 6 1.8363 -3.7073 0.1674 19 1 -0.4851 0.8400 0.0004 20 1 -0.2252 -1.4786 -1.4607 21 1 -0.6188 -5.6003 -1.2555 22 1 1.0425 -7.0219 0.0160 23 1 3.0645 -7.0948 1.3844 24 1 3.5526 -2.9725 1.2294 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213940827.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:57 Heat of formation + Delta-G solvation = 39.769687 kcal Electronic energy + Delta-G solvation = -11819.299090 eV Core-core repulsion = 9696.579579 eV Total energy + Delta-G solvation = -2122.719511 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.064 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.50791 -36.68106 -34.51711 -31.61744 -30.91771 -28.81484 -25.96146 -23.41348 -22.61309 -21.08535 -17.95387 -16.96284 -16.34245 -15.45131 -15.20650 -13.85623 -13.36667 -13.27634 -13.23614 -12.66194 -12.13831 -11.88249 -11.55460 -11.47022 -11.08125 -10.78411 -10.12803 -9.82186 -8.93925 -8.87998 -8.50133 -7.86199 -7.36038 -7.20717 -4.76196 1.50833 2.15468 2.66871 2.81727 2.86363 3.14197 3.54265 4.22915 4.50596 5.26484 5.52172 5.63875 5.93309 6.03039 6.05270 6.20012 6.48363 6.56582 6.58902 6.86739 6.96262 7.20713 7.49278 7.61780 7.74289 7.93642 8.18305 8.42416 8.92400 9.56624 9.71402 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.043897 B = 0.012063 C = 0.009683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.700803 B = 2320.515235 C = 2891.016774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.066 3.934 3 Si 0.926 3.074 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.394 4.394 8 H 0.095 0.905 9 C 0.089 3.911 10 C -0.023 4.023 11 N -0.439 5.439 12 C -0.077 4.077 13 C -0.019 4.019 14 C -0.194 4.194 15 C 0.075 3.925 16 N -0.539 5.539 17 C 0.158 3.842 18 C -0.168 4.168 19 H 0.296 0.704 20 H 0.152 0.848 21 H 0.124 0.876 22 H 0.119 0.881 23 H 0.134 0.866 24 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.798 0.248 0.525 2.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.159 4.159 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.422 4.422 8 H 0.113 0.887 9 C 0.081 3.919 10 C -0.184 4.184 11 N -0.146 5.146 12 C -0.237 4.237 13 C -0.025 4.025 14 C -0.216 4.216 15 C -0.071 4.071 16 N -0.251 5.251 17 C -0.006 4.006 18 C -0.174 4.174 19 H 0.107 0.893 20 H 0.169 0.831 21 H 0.141 0.859 22 H 0.137 0.863 23 H 0.151 0.849 24 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.577 0.234 0.566 2.648 hybrid contribution 0.156 0.621 0.058 0.643 sum 2.733 0.855 0.624 2.931 Atomic orbital electron populations 1.69708 1.08119 1.31157 1.27750 1.26292 0.95053 1.02518 0.92019 0.85978 0.80451 0.78651 0.80080 1.18476 1.19541 1.17813 1.19799 0.97636 0.90430 1.34347 0.88722 1.19484 0.93144 0.90406 0.88837 1.22710 0.97565 0.94674 1.03439 1.66380 1.30933 0.98837 1.18423 1.21592 0.98607 0.94462 1.08997 1.18781 0.95549 0.92578 0.95630 1.21563 0.99664 0.97233 1.03140 1.21887 0.92864 0.96218 0.96155 1.67490 1.33449 0.98696 1.25470 1.22636 0.92181 0.94375 0.91430 1.20053 0.99146 0.94395 1.03781 0.89265 0.83118 0.85871 0.86275 0.84886 0.83191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.06 10.83 55.56 0.60 -16.46 14 2 C 0.07 1.44 5.23 -17.29 -0.09 1.35 14 3 Si 0.93 15.97 29.59 -169.99 -5.03 10.94 14 4 H -0.26 -4.46 7.11 56.52 0.40 -4.06 14 5 H -0.27 -4.58 7.11 56.52 0.40 -4.17 14 6 H -0.25 -4.32 7.11 56.52 0.40 -3.92 14 7 C -0.39 -9.19 8.63 -37.99 -0.33 -9.52 14 8 H 0.09 2.03 6.89 -52.49 -0.36 1.67 14 9 C 0.09 2.25 5.75 -104.62 -0.60 1.65 14 10 C -0.02 -0.60 9.93 -16.61 -0.16 -0.76 14 11 N -0.44 -11.42 10.21 -12.13 -0.12 -11.55 14 12 C -0.08 -1.87 11.04 -16.87 -0.19 -2.05 14 13 C -0.02 -0.44 5.75 -106.87 -0.61 -1.06 14 14 C -0.19 -3.95 9.93 -39.35 -0.39 -4.34 14 15 C 0.07 1.47 11.07 -17.92 -0.20 1.27 14 16 N -0.54 -11.68 10.31 -13.32 -0.14 -11.81 14 17 C 0.16 3.54 10.73 -17.24 -0.18 3.36 14 18 C -0.17 -4.12 5.91 -104.68 -0.62 -4.74 14 19 H 0.30 5.98 8.29 -40.82 -0.34 5.64 14 20 H 0.15 3.95 6.08 -52.49 -0.32 3.63 14 21 H 0.12 2.64 8.06 -52.49 -0.42 2.22 14 22 H 0.12 2.04 8.06 -52.49 -0.42 1.62 14 23 H 0.13 2.13 8.06 -52.49 -0.42 1.71 14 24 H 0.15 3.04 6.90 -52.48 -0.36 2.68 14 LS Contribution 218.55 15.07 3.29 3.29 Total: -1.00 -27.21 218.55 -6.22 -33.43 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -1.45 Total: 7.00 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -3.38 Total: -14.84 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.34 Total: -39.82 kcal Atomic # 14 Polarization: 15.97 SS G_CDS: -5.03 Total: 10.94 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -27.21 -6.22 -33.43 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213940827.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.195 kcal (2) G-P(sol) polarization free energy of solvation -27.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds