Wall clock time and date at job start Mon Mar 30 2020 02:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48500 * 109.47057 * 270.00114 * 3 2 1 5 5 H 1.48499 * 109.47270 * 30.00354 * 3 2 1 6 6 H 1.48502 * 109.46748 * 150.00338 * 3 2 1 7 7 C 1.40244 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00051 * 194.73006 * 7 2 1 9 9 C 1.40456 * 119.99954 * 14.72732 * 7 2 1 10 10 C 1.40823 * 121.31812 * 24.42961 * 9 7 2 11 11 N 1.31750 * 121.17119 * 179.97438 * 10 9 7 12 12 C 1.31548 * 123.83452 * 0.06781 * 11 10 9 13 13 C 1.40374 * 121.01339 * 359.90776 * 12 11 10 14 14 C 1.40429 * 123.00608 * 180.02562 * 13 12 11 15 15 C 1.36606 * 118.48052 * 180.27556 * 14 13 12 16 16 N 1.32349 * 121.91902 * 359.51305 * 15 14 13 17 17 C 1.31734 * 122.67725 * 0.48836 * 16 15 14 18 18 C 1.39191 * 119.71986 * 359.76522 * 17 16 15 19 19 H 0.97003 * 120.00539 * 359.97438 * 1 2 3 20 20 H 1.07999 * 119.40937 * 359.97438 * 10 9 7 21 21 H 1.07997 * 119.49235 * 179.97438 * 12 11 10 22 22 H 1.07998 * 120.76286 * 359.97438 * 14 13 12 23 23 H 1.07993 * 119.04142 * 179.74976 * 15 14 13 24 24 H 1.08003 * 120.14144 * 179.79798 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4381 2.6527 0.7001 6 1 3.5383 1.4401 0.7000 7 6 2.0080 -1.2145 -0.0005 8 1 3.0613 -1.2300 0.2373 9 6 1.3403 -2.4108 -0.3103 10 6 0.1689 -2.4141 -1.0919 11 7 -0.4548 -3.5380 -1.3811 12 6 -0.0528 -4.7236 -0.9772 13 6 1.1013 -4.8670 -0.1911 14 6 1.5684 -6.1113 0.2623 15 6 2.6996 -6.1431 1.0274 16 7 3.3641 -5.0420 1.3401 17 6 2.9808 -3.8444 0.9475 18 6 1.8363 -3.7073 0.1674 19 1 -0.4851 0.8400 0.0004 20 1 -0.2252 -1.4786 -1.4607 21 1 -0.6188 -5.6003 -1.2555 22 1 1.0425 -7.0219 0.0160 23 1 3.0645 -7.0948 1.3844 24 1 3.5526 -2.9725 1.2294 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213940827.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:54 Heat of formation + Delta-G solvation = 23.211154 kcal Electronic energy + Delta-G solvation = -11820.017122 eV Core-core repulsion = 9696.579579 eV Total energy + Delta-G solvation = -2123.437543 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.064 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.24365 -38.44724 -36.26416 -33.34639 -32.69932 -30.54342 -27.76225 -25.15539 -24.37991 -22.83636 -19.70489 -18.71916 -18.08532 -17.15881 -16.82463 -15.50371 -15.03869 -14.96991 -14.93914 -14.36705 -13.77641 -13.60672 -13.27054 -13.07340 -12.74790 -12.21877 -11.78929 -11.43982 -10.67303 -10.61463 -10.32551 -9.69824 -9.05542 -8.94968 -6.57896 -0.20362 0.37000 1.09097 1.38685 1.56190 1.60217 2.09745 2.48463 2.80886 3.66873 3.70031 4.03675 4.18947 4.30904 4.39035 4.43226 4.79520 4.86906 4.91975 5.11488 5.25003 5.45851 5.67748 5.82600 6.03072 6.15532 6.40555 6.57949 7.23749 7.83217 7.94037 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.043897 B = 0.012063 C = 0.009683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.700803 B = 2320.515235 C = 2891.016774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.029 3.971 3 Si 1.003 2.997 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.245 1.245 7 C -0.406 4.406 8 H 0.110 0.890 9 C 0.064 3.936 10 C -0.062 4.062 11 N -0.459 5.459 12 C -0.095 4.095 13 C -0.038 4.038 14 C -0.189 4.189 15 C 0.076 3.924 16 N -0.540 5.540 17 C 0.149 3.851 18 C -0.193 4.193 19 H 0.306 0.694 20 H 0.139 0.861 21 H 0.147 0.853 22 H 0.155 0.845 23 H 0.179 0.821 24 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.208 -0.025 1.347 4.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.194 4.194 3 Si 0.821 3.179 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.168 1.168 7 C -0.433 4.433 8 H 0.128 0.872 9 C 0.056 3.944 10 C -0.222 4.222 11 N -0.166 5.166 12 C -0.256 4.256 13 C -0.045 4.045 14 C -0.211 4.211 15 C -0.070 4.070 16 N -0.252 5.252 17 C -0.015 4.015 18 C -0.199 4.199 19 H 0.118 0.882 20 H 0.156 0.844 21 H 0.164 0.836 22 H 0.173 0.827 23 H 0.196 0.804 24 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.978 -0.040 1.389 4.214 hybrid contribution -0.273 0.600 -0.141 0.674 sum 3.705 0.560 1.247 3.950 Atomic orbital electron populations 1.69754 1.09874 1.32853 1.27227 1.27300 0.95646 1.05691 0.90713 0.84861 0.79202 0.73692 0.80182 1.18155 1.18678 1.16817 1.20216 0.98395 0.90767 1.33885 0.87206 1.19765 0.93368 0.91812 0.89408 1.22555 0.99261 0.94467 1.05893 1.66298 1.31621 0.99520 1.19170 1.22008 0.99456 0.94566 1.09569 1.19159 0.95544 0.94030 0.95788 1.21938 0.99819 0.97113 1.02204 1.22615 0.92161 0.97266 0.94930 1.67583 1.33611 0.98916 1.25083 1.22819 0.91849 0.95422 0.91394 1.20356 1.00271 0.94541 1.04686 0.88166 0.84407 0.83580 0.82696 0.80384 0.81817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -36.08 10.83 21.88 0.24 -35.84 14 2 C 0.03 1.25 5.23 85.35 0.45 1.70 14 3 Si 1.00 31.66 29.59 68.60 2.03 33.69 14 4 H -0.26 -7.98 7.11 99.48 0.71 -7.27 14 5 H -0.26 -7.90 7.11 99.48 0.71 -7.20 14 6 H -0.25 -7.33 7.11 99.48 0.71 -6.63 14 7 C -0.41 -19.06 8.63 23.30 0.20 -18.86 14 8 H 0.11 4.64 6.89 -2.91 -0.02 4.62 14 9 C 0.06 3.33 5.75 -19.87 -0.11 3.22 14 10 C -0.06 -3.39 9.93 85.34 0.85 -2.55 14 11 N -0.46 -24.70 10.21 -192.28 -1.96 -26.67 14 12 C -0.10 -4.66 11.04 85.26 0.94 -3.72 14 13 C -0.04 -1.80 5.75 -21.32 -0.12 -1.93 14 14 C -0.19 -7.19 9.93 22.42 0.22 -6.97 14 15 C 0.08 2.75 11.07 84.23 0.93 3.68 14 16 N -0.54 -22.09 10.31 -196.07 -2.02 -24.11 14 17 C 0.15 6.54 10.73 84.94 0.91 7.45 14 18 C -0.19 -9.51 5.91 -19.90 -0.12 -9.62 14 19 H 0.31 12.49 8.29 -92.71 -0.77 11.72 14 20 H 0.14 7.65 6.08 -2.91 -0.02 7.63 14 21 H 0.15 6.17 8.06 -2.91 -0.02 6.15 14 22 H 0.16 4.69 8.06 -2.91 -0.02 4.67 14 23 H 0.18 4.77 8.06 -2.91 -0.02 4.74 14 24 H 0.16 6.49 6.90 -2.91 -0.02 6.47 14 Total: -1.00 -59.27 218.55 3.65 -55.62 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 1.22 Total: 24.92 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: 4.15 Total: -27.60 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -3.75 Total: -86.62 kcal Atomic # 14 Polarization: 31.66 SS G_CDS: 2.03 Total: 33.69 kcal Total: -59.27 3.65 -55.62 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213940827.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.826 kcal (2) G-P(sol) polarization free energy of solvation -59.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds