Wall clock time and date at job start Mon Mar 30 2020 02:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 110.29881 * 2 1 4 4 C 1.50690 * 109.47192 * 305.70214 * 3 2 1 5 5 H 1.08000 * 120.00228 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99781 * 179.97438 * 4 3 2 7 7 N 1.31507 * 119.99924 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99618 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47168 * 90.00385 * 8 6 4 10 10 H 1.48504 * 109.46723 * 210.00217 * 8 6 4 11 11 H 1.48499 * 109.47208 * 329.99986 * 8 6 4 12 12 S 1.83455 * 110.33648 * 237.73230 * 2 1 3 13 13 C 1.84088 * 95.49903 * 260.43417 * 12 2 1 14 14 C 1.55230 * 100.50091 * 325.43187 * 13 12 2 15 15 C 1.50525 * 109.17581 * 41.06971 * 14 13 12 16 16 O 1.20758 * 123.32643 * 149.69625 * 15 14 13 17 17 H 1.09002 * 109.47153 * 298.53634 * 1 2 3 18 18 H 1.09001 * 109.46832 * 178.53825 * 1 2 3 19 19 H 1.09004 * 109.47261 * 58.53806 * 1 2 3 20 20 H 1.08996 * 109.46852 * 65.70362 * 3 2 1 21 21 H 1.09001 * 109.47152 * 185.69979 * 3 2 1 22 22 H 0.97004 * 119.99709 * 180.02562 * 7 6 4 23 23 H 1.09003 * 111.20579 * 207.61616 * 13 12 2 24 24 H 1.08998 * 111.24237 * 83.25781 * 13 12 2 25 25 H 1.09005 * 109.53398 * 281.13136 * 14 13 12 26 26 H 1.08997 * 109.50427 * 160.99226 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0608 1.4350 0.0000 4 6 1.4574 2.1938 -1.1537 5 1 0.7643 1.7019 -1.8201 6 6 1.7895 3.5164 -1.3579 7 7 2.6330 4.1154 -0.5462 8 14 1.0409 4.4571 -2.7878 9 1 -0.2237 5.1004 -2.3492 10 1 1.9934 5.4998 -3.2469 11 1 0.7582 3.5191 -3.9037 12 16 2.1675 -0.9184 -1.4545 13 6 2.5144 -2.4781 -0.5402 14 6 2.9524 -1.9081 0.8356 15 6 2.0560 -0.7555 1.2013 16 8 1.7838 -0.4622 2.3407 17 1 -0.3633 0.4909 0.9028 18 1 -0.3633 -1.0274 -0.0262 19 1 -0.3634 0.5364 -0.8766 20 1 1.7902 1.9224 0.9366 21 1 3.1459 1.4211 -0.1021 22 1 2.8663 5.0460 -0.6897 23 1 3.3223 -3.0391 -1.0100 24 1 1.6164 -3.0887 -0.4462 25 1 3.9844 -1.5623 0.7750 26 1 2.8728 -2.6867 1.5941 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221083878.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:10 Heat of formation + Delta-G solvation = -49.358073 kcal Electronic energy + Delta-G solvation = -11057.548110 eV Core-core repulsion = 9034.114929 eV Total energy + Delta-G solvation = -2023.433181 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.061 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.32376 -34.72500 -33.21413 -31.70044 -27.16001 -25.32584 -23.80428 -21.59387 -18.59559 -16.77083 -16.01096 -15.39119 -15.05312 -14.45889 -13.93177 -13.33499 -13.00938 -12.72650 -12.47935 -12.01153 -11.63524 -11.48841 -10.95342 -10.89670 -10.49578 -10.27892 -9.94649 -9.47557 -9.41060 -8.75832 -8.40917 -7.13799 -6.05407 -4.07775 2.14715 2.27670 2.83991 3.31369 3.37662 3.41793 4.26139 4.45778 4.73314 5.10243 5.17734 5.31923 5.63018 5.67914 5.72476 5.90028 5.98132 6.38230 6.55002 6.82550 7.45354 7.48654 7.68485 7.90144 8.25609 8.94272 9.55608 11.05892 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.047836 B = 0.011659 C = 0.010681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.190016 B = 2400.969290 C = 2620.833580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.057 4.057 3 C 0.050 3.950 4 C -0.513 4.513 5 H 0.064 0.936 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.894 3.106 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.272 1.272 12 S -0.238 6.238 13 C -0.089 4.089 14 C -0.184 4.184 15 C 0.372 3.628 16 O -0.439 6.439 17 H 0.064 0.936 18 H 0.041 0.959 19 H 0.085 0.915 20 H 0.036 0.964 21 H 0.031 0.969 22 H 0.262 0.738 23 H 0.108 0.892 24 H 0.087 0.913 25 H 0.114 0.886 26 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.701 -11.134 0.178 11.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.167 4.167 3 C 0.012 3.988 4 C -0.552 4.552 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 S -0.010 6.010 13 C -0.237 4.237 14 C -0.223 4.223 15 C 0.245 3.755 16 O -0.311 6.311 17 H 0.083 0.917 18 H 0.060 0.940 19 H 0.104 0.896 20 H 0.054 0.946 21 H 0.049 0.951 22 H 0.072 0.928 23 H 0.126 0.874 24 H 0.106 0.894 25 H 0.132 0.868 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.597 -10.515 -0.367 10.538 hybrid contribution -0.380 0.282 0.337 0.581 sum -0.977 -10.233 -0.030 10.280 Atomic orbital electron populations 1.21781 0.90803 1.00485 1.04186 1.24091 0.99967 1.02236 0.90453 1.19125 0.96989 0.83785 0.98860 1.21062 1.26825 0.95661 1.11630 0.91797 1.24976 0.95063 0.97671 0.96452 1.69959 1.33738 1.11995 1.37462 0.86551 0.78938 0.79690 0.82669 1.20623 1.21183 1.19675 1.88256 1.85091 1.09344 1.18310 1.24183 1.04400 0.98844 0.96250 1.22719 1.02527 0.98691 0.98347 1.25041 0.77465 0.82959 0.90042 1.90368 1.51928 1.65371 1.23393 0.91749 0.93994 0.89589 0.94640 0.95105 0.92832 0.87370 0.89436 0.86789 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 8.32 37.16 0.31 -1.87 15 2 C -0.06 -1.17 0.83 -91.45 -0.08 -1.25 15 3 C 0.05 1.29 4.14 -27.88 -0.12 1.18 15 4 C -0.51 -14.03 7.95 -34.44 -0.27 -14.30 15 5 H 0.06 1.71 6.35 -52.49 -0.33 1.37 15 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 7 N -0.89 -26.51 13.29 55.43 0.74 -25.77 15 8 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 15 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 11 H -0.27 -6.46 7.11 56.52 0.40 -6.05 15 12 S -0.24 -4.44 21.72 -107.50 -2.33 -6.78 15 13 C -0.09 -1.15 7.56 38.34 0.29 -0.86 15 14 C -0.18 -2.58 6.23 -26.79 -0.17 -2.75 15 15 C 0.37 6.98 6.06 -28.80 -0.17 6.80 15 16 O -0.44 -9.25 17.95 6.00 0.11 -9.14 15 17 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15 18 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 19 H 0.09 1.73 6.31 -51.93 -0.33 1.40 15 20 H 0.04 0.99 8.14 -51.93 -0.42 0.57 15 21 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 23 H 0.11 1.15 8.14 -51.93 -0.42 0.73 15 24 H 0.09 1.01 8.14 -51.93 -0.42 0.58 15 25 H 0.11 1.53 8.14 -51.93 -0.42 1.10 15 26 H 0.10 1.11 8.14 -51.93 -0.42 0.69 15 LS Contribution 236.46 15.07 3.56 3.56 Total: -1.00 -30.41 236.46 -6.43 -36.84 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -3.18 Total: -3.78 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -0.30 Total: -11.45 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.11 Total: -9.14 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -4.44 SS G_CDS: -2.33 Total: -6.78 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.41 -6.43 -36.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221083878.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.522 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds