Wall clock time and date at job start Mon Mar 30 2020 02:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99994 * 2 1 4 4 H 1.48501 * 109.46531 * 240.00111 * 3 2 1 5 5 H 1.48502 * 109.47014 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47009 * 119.99830 * 3 2 1 7 7 C 1.38811 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99780 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00559 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.64258 * 0.02875 * 9 7 2 11 11 C 1.54321 * 107.26791 * 181.03445 * 10 9 7 12 12 C 1.55448 * 102.96961 * 22.19024 * 11 10 9 13 13 N 1.46903 * 111.01226 * 82.52397 * 12 11 10 14 14 C 1.50700 * 111.11612 * 206.45980 * 12 11 10 15 15 O 1.20827 * 120.00178 * 18.56216 * 14 12 11 16 16 O 1.34234 * 119.99874 * 198.55626 * 14 12 11 17 17 C 1.47419 * 125.65165 * 179.97438 * 9 7 2 18 18 H 0.97004 * 120.00521 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.88266 * 300.44821 * 10 9 7 20 20 H 1.09000 * 109.88221 * 61.61637 * 10 9 7 21 21 H 1.08998 * 110.71927 * 140.55469 * 11 10 9 22 22 H 1.08998 * 110.72073 * 263.64892 * 11 10 9 23 23 H 1.00896 * 111.00457 * 186.50206 * 13 12 11 24 24 H 1.00902 * 111.00093 * 310.45910 * 13 12 11 25 25 H 0.96694 * 116.99753 * 180.02562 * 16 14 12 26 26 H 1.09002 * 110.36926 * 274.73635 * 17 9 7 27 27 H 1.08995 * 110.36556 * 36.94919 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 -0.1376 -2.5328 0.0017 11 6 -0.4485 -4.0441 0.0296 12 6 0.8540 -4.6574 0.6158 13 7 0.8614 -4.5750 2.0825 14 6 1.0387 -6.0807 0.1561 15 8 0.4388 -6.4857 -0.8113 16 8 1.8697 -6.8984 0.8214 17 6 1.9334 -3.7312 0.0017 18 1 -0.4851 0.8400 -0.0004 19 1 -0.5576 -2.0515 0.8848 20 1 -0.5544 -2.0852 -0.9006 21 1 -1.2985 -4.2510 0.6798 22 1 -0.6348 -4.4182 -0.9770 23 1 1.7489 -4.8750 2.4572 24 1 0.6345 -3.6423 2.3934 25 1 1.9557 -7.8022 0.4887 26 1 2.1659 -4.0425 -1.0167 27 1 2.8342 -3.7397 0.6153 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229280542.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:54 Heat of formation + Delta-G solvation = -65.124600 kcal Electronic energy + Delta-G solvation = -13297.519435 eV Core-core repulsion = 10862.942446 eV Total energy + Delta-G solvation = -2434.576989 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.22242 -37.62343 -35.85267 -33.48564 -31.01990 -29.06414 -27.24859 -24.91753 -22.90104 -20.36699 -19.36128 -17.72827 -17.20430 -16.37187 -15.40141 -14.73864 -14.64087 -14.18820 -13.60257 -13.20290 -12.55539 -12.42650 -11.94609 -11.36613 -11.08103 -10.97809 -10.81061 -10.53528 -10.27266 -10.20146 -10.05667 -9.78986 -8.74145 -8.44520 -6.96099 -5.81002 -3.16954 2.45327 3.27926 3.35972 3.40778 3.41886 4.42146 4.84543 4.98525 5.30386 5.38922 5.54930 5.75086 6.20798 6.25905 6.32094 6.41926 6.54756 6.70214 7.33772 7.44925 7.52604 7.72207 7.77729 8.12960 8.15379 9.10045 9.69214 10.33223 11.30135 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.067332 B = 0.009648 C = 0.009254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.751071 B = 2901.364345 C = 3024.874705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.003 4.003 3 Si 0.916 3.084 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.238 4.238 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.174 3.826 11 C -0.127 4.127 12 C 0.110 3.890 13 N -0.821 5.821 14 C 0.507 3.493 15 O -0.518 6.518 16 O -0.513 6.513 17 C 0.119 3.881 18 H 0.255 0.745 19 H 0.053 0.947 20 H 0.050 0.950 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.343 0.657 24 H 0.361 0.639 25 H 0.401 0.599 26 H 0.024 0.976 27 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.338 -8.912 2.583 9.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.200 4.200 3 Si 0.746 3.254 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.366 4.366 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.050 3.950 11 C -0.165 4.165 12 C 0.014 3.986 13 N -0.353 5.353 14 C 0.348 3.652 15 O -0.405 6.405 16 O -0.323 6.323 17 C -0.009 4.009 18 H 0.065 0.935 19 H 0.071 0.929 20 H 0.068 0.932 21 H 0.094 0.906 22 H 0.097 0.903 23 H 0.156 0.844 24 H 0.177 0.823 25 H 0.259 0.741 26 H 0.042 0.958 27 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.464 -8.894 2.433 9.337 hybrid contribution 1.307 0.911 -0.437 1.652 sum 2.771 -7.983 1.996 8.683 Atomic orbital electron populations 1.69943 1.04916 1.25490 1.56178 1.24826 0.95756 0.97782 1.01637 0.86144 0.78441 0.82861 0.77946 1.21094 1.21481 1.21054 1.18996 0.90452 0.82081 1.45039 0.90372 1.44422 1.01660 0.99268 1.87311 1.21276 0.84128 0.87806 1.01812 1.23102 0.94020 0.98583 1.00823 1.21862 1.00235 0.86094 0.90431 1.58893 1.38020 1.33249 1.05182 1.23310 0.74360 0.87803 0.79718 1.90672 1.46265 1.76206 1.27379 1.84587 1.62128 1.27150 1.58467 1.22166 0.93826 0.87034 0.97909 0.93451 0.92862 0.93220 0.90642 0.90279 0.84377 0.82293 0.74084 0.95797 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.28 10.31 55.49 0.57 -25.71 15 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 15 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 15 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.24 -6.46 10.28 -15.06 -0.15 -6.61 15 8 H 0.08 2.04 7.83 -52.48 -0.41 1.63 15 9 N -0.60 -14.90 3.39 -170.07 -0.58 -15.47 15 10 C 0.17 4.16 4.99 -3.06 -0.02 4.14 15 11 C -0.13 -2.51 5.90 -24.74 -0.15 -2.66 15 12 C 0.11 2.01 1.15 -130.44 -0.15 1.86 15 13 N -0.82 -13.49 9.01 1.68 0.02 -13.47 15 14 C 0.51 8.63 7.33 36.01 0.26 8.89 15 15 O -0.52 -9.97 16.52 -18.75 -0.31 -10.28 15 16 O -0.51 -6.73 13.00 -39.27 -0.51 -7.24 15 17 C 0.12 2.47 6.37 -2.52 -0.02 2.46 15 18 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 19 H 0.05 1.36 7.38 -51.93 -0.38 0.98 15 20 H 0.05 1.32 7.51 -51.93 -0.39 0.93 15 21 H 0.07 1.39 8.14 -51.93 -0.42 0.97 15 22 H 0.08 1.60 7.23 -51.93 -0.38 1.22 15 23 H 0.34 5.06 8.78 -39.29 -0.35 4.71 15 24 H 0.36 6.38 8.60 -39.29 -0.34 6.04 15 25 H 0.40 3.32 9.10 45.56 0.41 3.74 15 26 H 0.02 0.52 8.03 -51.93 -0.42 0.10 15 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 LS Contribution 233.68 15.07 3.52 3.52 Total: -1.00 -30.59 233.68 -4.85 -35.44 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -2.22 Total: 8.73 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -0.31 Total: 7.90 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.01 Total: -54.66 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.82 Total: -17.52 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -30.59 -4.85 -35.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229280542.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.681 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds