Wall clock time and date at job start Mon Mar 30 2020 02:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99994 * 2 1 4 4 H 1.48501 * 109.46531 * 240.00111 * 3 2 1 5 5 H 1.48502 * 109.47014 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47009 * 119.99830 * 3 2 1 7 7 C 1.38811 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99780 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00559 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.64258 * 0.02875 * 9 7 2 11 11 C 1.54321 * 107.26791 * 181.03445 * 10 9 7 12 12 C 1.55448 * 102.96961 * 22.19024 * 11 10 9 13 13 N 1.46903 * 111.01226 * 82.52397 * 12 11 10 14 14 C 1.50700 * 111.11612 * 206.45980 * 12 11 10 15 15 O 1.20827 * 120.00178 * 18.56216 * 14 12 11 16 16 O 1.34234 * 119.99874 * 198.55626 * 14 12 11 17 17 C 1.47419 * 125.65165 * 179.97438 * 9 7 2 18 18 H 0.97004 * 120.00521 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.88266 * 300.44821 * 10 9 7 20 20 H 1.09000 * 109.88221 * 61.61637 * 10 9 7 21 21 H 1.08998 * 110.71927 * 140.55469 * 11 10 9 22 22 H 1.08998 * 110.72073 * 263.64892 * 11 10 9 23 23 H 1.00896 * 111.00457 * 186.50206 * 13 12 11 24 24 H 1.00902 * 111.00093 * 310.45910 * 13 12 11 25 25 H 0.96694 * 116.99753 * 180.02562 * 16 14 12 26 26 H 1.09002 * 110.36926 * 274.73635 * 17 9 7 27 27 H 1.08995 * 110.36556 * 36.94919 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 -0.1376 -2.5328 0.0017 11 6 -0.4485 -4.0441 0.0296 12 6 0.8540 -4.6574 0.6158 13 7 0.8614 -4.5750 2.0825 14 6 1.0387 -6.0807 0.1561 15 8 0.4388 -6.4857 -0.8113 16 8 1.8697 -6.8984 0.8214 17 6 1.9334 -3.7312 0.0017 18 1 -0.4851 0.8400 -0.0004 19 1 -0.5576 -2.0515 0.8848 20 1 -0.5544 -2.0852 -0.9006 21 1 -1.2985 -4.2510 0.6798 22 1 -0.6348 -4.4182 -0.9770 23 1 1.7489 -4.8750 2.4572 24 1 0.6345 -3.6423 2.3934 25 1 1.9557 -7.8022 0.4887 26 1 2.1659 -4.0425 -1.0167 27 1 2.8342 -3.7397 0.6153 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229280542.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:52 Heat of formation + Delta-G solvation = -89.482330 kcal Electronic energy + Delta-G solvation = -13298.575665 eV Core-core repulsion = 10862.942446 eV Total energy + Delta-G solvation = -2435.633219 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.60411 -39.22794 -37.10825 -35.30170 -32.84065 -30.84880 -28.85978 -26.78073 -24.44739 -22.23135 -20.83622 -19.04040 -19.00780 -17.93214 -16.79225 -16.70048 -16.01138 -15.86181 -15.29205 -14.87989 -14.20742 -13.90819 -13.81107 -13.01471 -12.80150 -12.59810 -12.41066 -12.20584 -12.09341 -12.01373 -11.84877 -11.54429 -10.74343 -9.91323 -8.95755 -7.88637 -5.26801 1.09733 1.47999 1.50687 1.57156 2.01783 2.48959 3.29479 3.41697 3.48308 3.64382 3.81874 4.32137 4.50779 4.54381 4.71091 4.86609 4.96020 5.40703 5.54118 5.55325 5.69530 5.95812 6.11811 6.46744 6.99829 7.03646 7.68114 8.31762 9.21242 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.067332 B = 0.009648 C = 0.009254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.751071 B = 2901.364345 C = 3024.874705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.058 4.058 3 Si 0.982 3.018 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.251 4.251 8 H 0.085 0.915 9 N -0.617 5.617 10 C 0.187 3.813 11 C -0.116 4.116 12 C 0.119 3.881 13 N -0.809 5.809 14 C 0.517 3.483 15 O -0.542 6.542 16 O -0.497 6.497 17 C 0.117 3.883 18 H 0.250 0.750 19 H 0.030 0.970 20 H 0.011 0.989 21 H 0.091 0.909 22 H 0.075 0.925 23 H 0.356 0.644 24 H 0.356 0.644 25 H 0.428 0.572 26 H 0.019 0.981 27 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.513 -9.980 3.280 11.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.810 3.190 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.199 1.199 7 C -0.380 4.380 8 H 0.103 0.897 9 N -0.344 5.344 10 C 0.062 3.938 11 C -0.154 4.154 12 C 0.023 3.977 13 N -0.342 5.342 14 C 0.359 3.641 15 O -0.431 6.431 16 O -0.310 6.310 17 C -0.011 4.011 18 H 0.059 0.941 19 H 0.048 0.952 20 H 0.030 0.970 21 H 0.109 0.891 22 H 0.093 0.907 23 H 0.171 0.829 24 H 0.170 0.830 25 H 0.290 0.710 26 H 0.037 0.963 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.684 -10.027 3.148 10.847 hybrid contribution 0.995 1.155 -0.642 1.654 sum 3.679 -8.872 2.506 9.926 Atomic orbital electron populations 1.70152 1.06308 1.25700 1.57378 1.25660 0.96598 1.01040 1.01900 0.85105 0.77100 0.78541 0.78242 1.20592 1.22087 1.19903 1.19400 0.91083 0.83222 1.44267 0.89690 1.44623 1.02151 1.00368 1.87213 1.20960 0.83812 0.90235 0.98821 1.22894 0.95616 0.95625 1.01289 1.21599 0.97964 0.87000 0.91177 1.58873 1.38855 1.32750 1.03759 1.22763 0.74541 0.87523 0.79257 1.90681 1.47434 1.76631 1.28366 1.84497 1.60380 1.28644 1.57490 1.22291 0.95038 0.85682 0.98067 0.94122 0.95179 0.97045 0.89094 0.90659 0.82892 0.82955 0.71030 0.96338 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.49 10.31 21.65 0.22 -55.27 15 2 C -0.06 -3.22 5.49 84.86 0.47 -2.75 15 3 Si 0.98 44.48 29.55 68.60 2.03 46.50 15 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 15 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 7 C -0.25 -13.63 10.28 84.03 0.86 -12.77 15 8 H 0.09 4.37 7.83 -2.91 -0.02 4.35 15 9 N -0.62 -30.69 3.39 -691.97 -2.35 -33.04 15 10 C 0.19 9.10 4.99 86.73 0.43 9.53 15 11 C -0.12 -4.52 5.90 31.88 0.19 -4.33 15 12 C 0.12 4.12 1.15 4.28 0.00 4.13 15 13 N -0.81 -24.73 9.01 -148.60 -1.34 -26.07 15 14 C 0.52 16.18 7.33 71.24 0.52 16.70 15 15 O -0.54 -19.64 16.52 21.96 0.36 -19.28 15 16 O -0.50 -11.11 13.00 -51.45 -0.67 -11.77 15 17 C 0.12 4.70 6.37 86.86 0.55 5.25 15 18 H 0.25 14.27 8.31 -92.70 -0.77 13.50 15 19 H 0.03 1.59 7.38 -2.39 -0.02 1.57 15 20 H 0.01 0.63 7.51 -2.39 -0.02 0.61 15 21 H 0.09 3.26 8.14 -2.39 -0.02 3.24 15 22 H 0.07 3.01 7.23 -2.39 -0.02 2.99 15 23 H 0.36 9.40 8.78 -89.70 -0.79 8.62 15 24 H 0.36 12.03 8.60 -89.69 -0.77 11.26 15 25 H 0.43 5.22 9.10 -74.06 -0.67 4.55 15 26 H 0.02 0.78 8.03 -2.39 -0.02 0.76 15 27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 15 Total: -1.00 -65.18 233.68 0.27 -64.91 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -1.02 Total: 18.25 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 3.03 Total: 15.77 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -3.46 Total: -114.38 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.31 Total: -31.05 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -65.18 0.27 -64.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229280542.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.573 kcal (2) G-P(sol) polarization free energy of solvation -65.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds