Wall clock time and date at job start Mon Mar 30 2020 03:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 110.01818 * 2 1 4 4 C 1.50702 * 109.47159 * 58.60413 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72211 * 4 3 2 7 7 N 1.31514 * 119.99985 * 180.27663 * 6 4 3 8 8 Si 1.86800 * 119.99777 * 0.28166 * 6 4 3 9 9 H 1.48498 * 109.47109 * 89.99834 * 8 6 4 10 10 H 1.48507 * 109.46754 * 209.99574 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99405 * 8 6 4 12 12 C 1.54268 * 110.07045 * 121.41231 * 2 1 3 13 13 H 1.08996 * 110.48926 * 214.37351 * 12 2 1 14 14 O 1.42906 * 110.48896 * 337.02267 * 12 2 1 15 15 C 1.54899 * 104.19366 * 95.69827 * 12 2 1 16 16 C 1.54889 * 102.74676 * 37.94440 * 15 12 2 17 17 C 1.53872 * 110.03254 * 238.60274 * 2 1 3 18 18 H 1.08993 * 110.03590 * 359.95540 * 17 2 1 19 19 O 1.42911 * 110.02611 * 121.33594 * 17 2 1 20 20 H 1.08994 * 109.46903 * 60.70419 * 1 2 3 21 21 H 1.08993 * 109.46954 * 180.70384 * 1 2 3 22 22 H 1.08995 * 109.46902 * 300.70216 * 1 2 3 23 23 H 1.09004 * 109.47066 * 298.60617 * 3 2 1 24 24 H 1.08994 * 109.47405 * 178.60447 * 3 2 1 25 25 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 26 26 H 0.96698 * 113.99670 * 179.97438 * 14 12 2 27 27 H 1.08998 * 110.75504 * 279.62319 * 15 12 2 28 28 H 1.09002 * 110.75251 * 156.25619 * 15 12 2 29 29 H 1.09002 * 110.48338 * 203.38230 * 16 15 12 30 30 H 1.08998 * 110.60340 * 80.79037 * 16 15 12 31 31 H 0.96698 * 113.99235 * 179.97438 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 6 1.5303 2.1629 1.2128 5 1 0.8885 1.6498 1.9138 6 6 1.8756 3.4799 1.4309 7 7 1.4232 4.1113 2.4921 8 14 2.9861 4.3672 0.2188 9 1 2.1570 5.0170 -0.8279 10 1 3.7765 5.3997 0.9361 11 1 3.9075 3.3903 -0.4151 12 6 2.0594 -0.7552 1.2366 13 1 2.9819 -0.2993 1.5961 14 8 1.0735 -0.7745 2.2709 15 6 2.3298 -2.1897 0.7186 16 6 2.8886 -1.9397 -0.7042 17 6 2.0571 -0.7531 -1.2339 18 1 1.2230 -1.1193 -1.8324 19 8 2.8808 0.1109 -2.0197 20 1 -0.3633 0.5028 -0.8962 21 1 -0.3633 -1.0275 0.0126 22 1 -0.3633 0.5247 0.8836 23 1 1.7158 1.9474 -0.9023 24 1 3.1434 1.4273 0.0250 25 1 1.6659 5.0378 2.6453 26 1 1.3534 -1.2374 3.0724 27 1 1.4052 -2.7653 0.6750 28 1 3.0699 -2.6922 1.3415 29 1 2.7415 -2.8188 -1.3317 30 1 3.9452 -1.6757 -0.6604 31 1 3.2442 -0.3064 -2.8127 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238254041.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:04 Heat of formation + Delta-G solvation = -140.780280 kcal Electronic energy + Delta-G solvation = -13876.081709 eV Core-core repulsion = 11541.764387 eV Total energy + Delta-G solvation = -2334.317322 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.67599 -37.29179 -35.46713 -34.57227 -32.99322 -29.41050 -27.53740 -26.20426 -23.68348 -21.99751 -19.50253 -18.80340 -18.26084 -17.85171 -16.43922 -15.99676 -15.34876 -14.96073 -14.70506 -14.54082 -13.98616 -13.92458 -13.22178 -12.97132 -12.77633 -12.66282 -12.41756 -12.24228 -11.89184 -11.63325 -11.26388 -11.11327 -10.79522 -10.77723 -10.60965 -10.42344 -8.19490 -6.18466 1.33428 1.34256 1.49345 2.40678 3.14483 3.36373 3.57638 3.67007 3.81102 4.30209 4.36223 4.48878 4.50764 4.63768 4.69244 4.83263 4.95151 5.06490 5.14107 5.18984 5.36685 5.41977 5.49456 5.56527 5.72964 5.80620 6.48028 6.91958 7.12054 7.13096 7.44052 8.96817 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.036647 B = 0.014101 C = 0.011596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.865024 B = 1985.237986 C = 2414.065406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.054 4.054 3 C 0.022 3.978 4 C -0.506 4.506 5 H 0.055 0.945 6 C 0.000 4.000 7 N -0.955 5.955 8 Si 0.938 3.062 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.255 1.255 12 C 0.117 3.883 13 H 0.036 0.964 14 O -0.568 6.568 15 C -0.144 4.144 16 C -0.144 4.144 17 C 0.105 3.895 18 H 0.074 0.926 19 O -0.578 6.578 20 H 0.039 0.961 21 H 0.062 0.938 22 H 0.040 0.960 23 H 0.004 0.996 24 H 0.007 0.993 25 H 0.261 0.739 26 H 0.381 0.619 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.661 -14.520 -7.904 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.054 4.054 3 C -0.015 4.015 4 C -0.544 4.544 5 H 0.073 0.927 6 C -0.195 4.195 7 N -0.597 5.597 8 Si 0.763 3.237 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.179 1.179 12 C 0.058 3.942 13 H 0.054 0.946 14 O -0.374 6.374 15 C -0.182 4.182 16 C -0.182 4.182 17 C 0.046 3.954 18 H 0.091 0.909 19 O -0.385 6.385 20 H 0.058 0.942 21 H 0.080 0.920 22 H 0.059 0.941 23 H 0.022 0.978 24 H 0.025 0.975 25 H 0.070 0.930 26 H 0.228 0.772 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 3.178 -13.606 -7.808 16.006 hybrid contribution 0.780 0.405 -0.032 0.879 sum 3.958 -13.202 -7.840 15.856 Atomic orbital electron populations 1.21424 0.93988 1.00495 1.00431 1.21130 0.96221 0.95345 0.92750 1.19206 0.95067 0.92925 0.94325 1.21702 1.28559 0.96249 1.07887 0.92700 1.25886 0.97851 0.98741 0.97003 1.70073 1.48194 1.11670 1.29781 0.85840 0.79969 0.78479 0.79432 1.19851 1.21137 1.17888 1.22477 0.89613 0.94654 0.87472 0.94610 1.86607 1.42683 1.80500 1.27604 1.23103 1.02145 0.95989 0.96914 1.22967 0.99983 0.98413 0.96798 1.22558 0.92615 0.89050 0.91178 0.90858 1.86702 1.68778 1.42163 1.40896 0.94165 0.91957 0.94125 0.97761 0.97494 0.93040 0.77177 0.89719 0.89645 0.88255 0.90788 0.76342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.31 7.27 71.98 0.52 -3.78 16 2 C -0.05 -2.20 0.64 -51.46 -0.03 -2.23 16 3 C 0.02 1.13 2.00 29.85 0.06 1.19 16 4 C -0.51 -30.51 8.43 25.60 0.22 -30.30 16 5 H 0.05 3.62 5.81 -2.91 -0.02 3.60 16 6 C 0.00 0.02 5.47 84.66 0.46 0.48 16 7 N -0.95 -62.78 13.96 21.45 0.30 -62.48 16 8 Si 0.94 48.13 27.47 68.60 1.88 50.02 16 9 H -0.27 -13.61 7.11 99.48 0.71 -12.90 16 10 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 11 H -0.25 -12.62 6.54 99.48 0.65 -11.97 16 12 C 0.12 4.31 3.05 31.67 0.10 4.40 16 13 H 0.04 1.49 7.84 -2.39 -0.02 1.47 16 14 O -0.57 -21.77 10.82 -148.98 -1.61 -23.38 16 15 C -0.14 -3.62 6.62 31.89 0.21 -3.40 16 16 C -0.14 -3.35 6.56 31.67 0.21 -3.14 16 17 C 0.10 3.19 3.89 31.32 0.12 3.31 16 18 H 0.07 1.95 7.67 -2.39 -0.02 1.93 16 19 O -0.58 -18.49 11.44 -148.98 -1.70 -20.20 16 20 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 21 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 22 H 0.04 1.96 5.99 -2.39 -0.01 1.94 16 23 H 0.00 0.22 7.30 -2.38 -0.02 0.20 16 24 H 0.01 0.36 6.89 -2.39 -0.02 0.34 16 25 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 26 H 0.38 10.78 9.12 -74.06 -0.68 10.11 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 31 H 0.39 7.68 9.11 -74.06 -0.67 7.00 16 Total: -1.00 -75.72 245.19 0.46 -75.26 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -0.28 Total: 14.25 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 1.87 Total: -33.47 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.30 Total: -62.48 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -3.32 Total: -43.58 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 1.88 Total: 50.02 kcal Total: -75.72 0.46 -75.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238254041.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.520 kcal (2) G-P(sol) polarization free energy of solvation -75.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds