Wall clock time and date at job start Mon Mar 30 2020 03:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 110.01792 * 2 1 4 4 C 1.50704 * 109.46945 * 300.70318 * 3 2 1 5 5 H 1.07992 * 120.00180 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99787 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00174 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99873 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47196 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47233 * 119.99928 * 8 6 4 11 11 H 1.48498 * 109.47015 * 239.99742 * 8 6 4 12 12 C 1.53873 * 110.03254 * 238.56230 * 2 1 3 13 13 H 1.08994 * 110.03897 * 121.42847 * 12 2 1 14 14 O 1.42903 * 110.03349 * 359.97438 * 12 2 1 15 15 C 1.54271 * 106.59672 * 240.71324 * 12 2 1 16 16 C 1.54887 * 104.19554 * 336.38739 * 15 12 2 17 17 C 1.54266 * 110.03511 * 121.39423 * 2 1 3 18 18 H 1.08996 * 110.48460 * 24.20932 * 17 2 1 19 19 O 1.42903 * 110.48439 * 261.70615 * 17 2 1 20 20 H 1.09002 * 109.47153 * 298.60681 * 1 2 3 21 21 H 1.09001 * 109.46832 * 178.60872 * 1 2 3 22 22 H 1.09004 * 109.47261 * 58.60853 * 1 2 3 23 23 H 1.08997 * 109.47104 * 60.69903 * 3 2 1 24 24 H 1.08997 * 109.47748 * 180.70185 * 3 2 1 25 25 H 0.97000 * 119.99991 * 180.02562 * 7 6 4 26 26 H 0.96701 * 114.00171 * 180.02562 * 14 12 2 27 27 H 1.08997 * 110.48569 * 217.70882 * 15 12 2 28 28 H 1.08998 * 110.48772 * 95.06851 * 15 12 2 29 29 H 1.08996 * 110.75911 * 279.62375 * 16 15 12 30 30 H 1.09003 * 110.75205 * 156.25365 * 16 15 12 31 31 H 0.96696 * 114.00292 * 179.97438 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 1.5440 2.1579 -1.2217 5 1 0.9103 1.6418 -1.9277 6 6 1.8876 3.4754 -1.4386 7 7 2.6597 4.1038 -0.5791 8 14 1.2553 4.3685 -2.9525 9 1 0.4117 3.4466 -3.7548 10 1 0.4469 5.5417 -2.5336 11 1 2.4049 4.8271 -3.7729 12 6 2.0571 -0.7540 -1.2334 13 1 2.6866 -0.0961 -1.8325 14 8 0.9634 -1.2343 -2.0179 15 6 2.8875 -1.9409 -0.7027 16 6 3.3137 -1.5004 0.7197 17 6 2.0585 -0.7550 1.2371 18 1 1.3143 -1.4652 1.5972 19 8 2.4112 0.1655 2.2718 20 1 -0.3633 0.4920 0.9022 21 1 -0.3633 -1.0274 -0.0250 22 1 -0.3634 0.5353 -0.8773 23 1 1.7055 1.9511 0.8962 24 1 3.1436 1.4273 -0.0126 25 1 2.9011 5.0308 -0.7315 26 1 1.2310 -1.7193 -2.8105 27 1 3.7637 -2.1042 -1.3301 28 1 2.2772 -2.8428 -0.6559 29 1 4.1710 -0.8288 0.6754 30 1 3.5325 -2.3673 1.3432 31 1 2.7496 -0.2552 3.0740 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238254071.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:10 Heat of formation + Delta-G solvation = -117.592877 kcal Electronic energy + Delta-G solvation = -13818.285428 eV Core-core repulsion = 11484.973587 eV Total energy + Delta-G solvation = -2333.311841 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.14527 -35.87802 -33.75916 -32.76931 -31.09422 -27.01616 -26.06965 -24.34908 -22.26573 -20.66875 -17.90181 -16.97657 -16.45821 -15.89252 -14.78266 -14.25821 -13.78542 -13.47788 -13.33219 -12.63138 -12.16078 -12.04909 -11.35065 -11.25905 -11.11338 -10.83944 -10.70973 -10.53446 -10.22901 -10.06055 -9.55952 -9.35178 -9.34534 -8.82745 -8.71498 -8.21644 -5.86415 -3.86779 3.37417 3.45065 3.50106 4.55886 4.69394 4.91522 5.05015 5.14607 5.48026 5.63778 5.72570 5.89546 5.97565 6.03103 6.18539 6.26371 6.37181 6.59701 6.62312 6.69606 7.00502 7.32138 7.36498 7.88842 8.02908 8.17041 8.23504 8.31172 8.60688 9.22604 9.75454 11.24737 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.037795 B = 0.012599 C = 0.010946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.665527 B = 2221.846429 C = 2557.325320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.045 4.045 3 C 0.048 3.952 4 C -0.512 4.512 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.895 5.895 8 Si 0.885 3.115 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.287 1.287 12 C 0.114 3.886 13 H 0.075 0.925 14 O -0.559 6.559 15 C -0.157 4.157 16 C -0.153 4.153 17 C 0.103 3.897 18 H 0.050 0.950 19 O -0.545 6.545 20 H 0.040 0.960 21 H 0.034 0.966 22 H 0.069 0.931 23 H 0.030 0.970 24 H 0.014 0.986 25 H 0.257 0.743 26 H 0.362 0.638 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.371 -11.608 1.174 11.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.045 4.045 3 C 0.011 3.989 4 C -0.550 4.550 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.535 5.535 8 Si 0.714 3.286 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.213 1.213 12 C 0.055 3.945 13 H 0.093 0.907 14 O -0.362 6.362 15 C -0.195 4.195 16 C -0.191 4.191 17 C 0.044 3.956 18 H 0.068 0.932 19 O -0.348 6.348 20 H 0.059 0.941 21 H 0.053 0.947 22 H 0.088 0.912 23 H 0.048 0.952 24 H 0.032 0.968 25 H 0.067 0.933 26 H 0.207 0.793 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.106 -10.701 1.227 10.771 hybrid contribution 0.363 -0.165 -0.835 0.926 sum 0.256 -10.865 0.392 10.876 Atomic orbital electron populations 1.21467 0.94312 0.99298 1.01696 1.21243 0.96200 0.98380 0.88672 1.18941 0.95744 0.87033 0.97161 1.21439 1.29905 0.96206 1.07491 0.92108 1.25015 0.95465 0.97737 0.96357 1.70007 1.36741 1.11009 1.35790 0.86640 0.78620 0.79847 0.83539 1.19751 1.21187 1.21292 1.22546 0.86866 0.92382 0.92704 0.90724 1.86615 1.34289 1.75864 1.39479 1.23068 1.00093 0.99421 0.96953 1.23090 0.99774 0.99798 0.96410 1.22796 0.93913 0.89974 0.88918 0.93204 1.86785 1.86403 1.35388 1.26180 0.94135 0.94681 0.91240 0.95192 0.96775 0.93339 0.79330 0.91918 0.91386 0.90321 0.92293 0.79461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 7.17 37.16 0.27 -2.09 16 2 C -0.04 -0.96 0.64 -153.39 -0.10 -1.06 16 3 C 0.05 1.29 3.20 -27.88 -0.09 1.20 16 4 C -0.51 -14.68 7.49 -34.44 -0.26 -14.94 16 5 H 0.06 1.73 6.47 -52.49 -0.34 1.39 16 6 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 7 N -0.90 -27.71 13.29 55.43 0.74 -26.98 16 8 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 C 0.11 2.18 3.33 -25.61 -0.09 2.09 16 13 H 0.07 1.60 7.19 -51.93 -0.37 1.23 16 14 O -0.56 -9.98 11.43 -35.23 -0.40 -10.39 16 15 C -0.16 -2.40 6.55 -25.07 -0.16 -2.57 16 16 C -0.15 -2.38 6.62 -24.74 -0.16 -2.55 16 17 C 0.10 1.87 3.61 -25.07 -0.09 1.78 16 18 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16 19 O -0.54 -10.30 11.79 -35.23 -0.42 -10.72 16 20 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 21 H 0.03 0.67 7.75 -51.93 -0.40 0.27 16 22 H 0.07 1.61 6.41 -51.93 -0.33 1.28 16 23 H 0.03 0.89 7.50 -51.93 -0.39 0.50 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.36 4.69 9.11 45.56 0.42 5.10 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.36 4.73 9.12 45.56 0.42 5.15 16 LS Contribution 249.94 15.07 3.77 3.77 Total: -1.00 -33.18 249.94 -5.20 -38.38 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -3.08 Total: 5.32 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -0.78 Total: -16.63 kcal Atomic # 7 Polarization: -27.71 SS G_CDS: 0.74 Total: -26.98 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.82 Total: -21.10 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -33.18 -5.20 -38.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238254071.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.209 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds