Wall clock time and date at job start Mon Mar 30 2020 03:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 110.01792 * 2 1 4 4 C 1.50704 * 109.46945 * 300.70318 * 3 2 1 5 5 H 1.07992 * 120.00180 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99787 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00174 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99873 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47196 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47233 * 119.99928 * 8 6 4 11 11 H 1.48498 * 109.47015 * 239.99742 * 8 6 4 12 12 C 1.53873 * 110.03254 * 238.56230 * 2 1 3 13 13 H 1.08994 * 110.03897 * 121.42847 * 12 2 1 14 14 O 1.42903 * 110.03349 * 359.97438 * 12 2 1 15 15 C 1.54271 * 106.59672 * 240.71324 * 12 2 1 16 16 C 1.54887 * 104.19554 * 336.38739 * 15 12 2 17 17 C 1.54266 * 110.03511 * 121.39423 * 2 1 3 18 18 H 1.08996 * 110.48460 * 24.20932 * 17 2 1 19 19 O 1.42903 * 110.48439 * 261.70615 * 17 2 1 20 20 H 1.09002 * 109.47153 * 298.60681 * 1 2 3 21 21 H 1.09001 * 109.46832 * 178.60872 * 1 2 3 22 22 H 1.09004 * 109.47261 * 58.60853 * 1 2 3 23 23 H 1.08997 * 109.47104 * 60.69903 * 3 2 1 24 24 H 1.08997 * 109.47748 * 180.70185 * 3 2 1 25 25 H 0.97000 * 119.99991 * 180.02562 * 7 6 4 26 26 H 0.96701 * 114.00171 * 180.02562 * 14 12 2 27 27 H 1.08997 * 110.48569 * 217.70882 * 15 12 2 28 28 H 1.08998 * 110.48772 * 95.06851 * 15 12 2 29 29 H 1.08996 * 110.75911 * 279.62375 * 16 15 12 30 30 H 1.09003 * 110.75205 * 156.25365 * 16 15 12 31 31 H 0.96696 * 114.00292 * 179.97438 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 1.5440 2.1579 -1.2217 5 1 0.9103 1.6418 -1.9277 6 6 1.8876 3.4754 -1.4386 7 7 2.6597 4.1038 -0.5791 8 14 1.2553 4.3685 -2.9525 9 1 0.4117 3.4466 -3.7548 10 1 0.4469 5.5417 -2.5336 11 1 2.4049 4.8271 -3.7729 12 6 2.0571 -0.7540 -1.2334 13 1 2.6866 -0.0961 -1.8325 14 8 0.9634 -1.2343 -2.0179 15 6 2.8875 -1.9409 -0.7027 16 6 3.3137 -1.5004 0.7197 17 6 2.0585 -0.7550 1.2371 18 1 1.3143 -1.4652 1.5972 19 8 2.4112 0.1655 2.2718 20 1 -0.3633 0.4920 0.9022 21 1 -0.3633 -1.0274 -0.0250 22 1 -0.3634 0.5353 -0.8773 23 1 1.7055 1.9511 0.8962 24 1 3.1436 1.4273 -0.0126 25 1 2.9011 5.0308 -0.7315 26 1 1.2310 -1.7193 -2.8105 27 1 3.7637 -2.1042 -1.3301 28 1 2.2772 -2.8428 -0.6559 29 1 4.1710 -0.8288 0.6754 30 1 3.5325 -2.3673 1.3432 31 1 2.7496 -0.2552 3.0740 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238254071.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:09 Heat of formation + Delta-G solvation = -144.510609 kcal Electronic energy + Delta-G solvation = -13819.452668 eV Core-core repulsion = 11484.973587 eV Total energy + Delta-G solvation = -2334.479081 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.64712 -37.29982 -35.56068 -34.52143 -32.85058 -29.03776 -27.50058 -26.13344 -24.19322 -21.99514 -19.56970 -18.54899 -18.14349 -17.75156 -16.52726 -16.05798 -15.34206 -14.91157 -14.73356 -14.34353 -13.95304 -13.73483 -13.20133 -12.94100 -12.74247 -12.66008 -12.56335 -12.18673 -11.96319 -11.72770 -11.29422 -11.08727 -10.84036 -10.62071 -10.48211 -10.44745 -8.13628 -6.22035 1.37238 1.38252 1.51655 2.42708 3.18393 3.35633 3.59534 3.69447 3.81337 4.28425 4.38254 4.52780 4.56702 4.66681 4.72363 4.85958 4.95923 5.08378 5.15795 5.24080 5.41234 5.53525 5.55116 5.64347 5.86194 5.94205 6.35046 6.92567 7.09856 7.14273 7.45099 8.98519 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.037795 B = 0.012599 C = 0.010946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.665527 B = 2221.846429 C = 2557.325320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.058 4.058 3 C 0.064 3.936 4 C -0.521 4.521 5 H 0.061 0.939 6 C -0.005 4.005 7 N -0.936 5.936 8 Si 0.958 3.042 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.278 1.278 12 C 0.116 3.884 13 H 0.040 0.960 14 O -0.569 6.569 15 C -0.143 4.143 16 C -0.146 4.146 17 C 0.102 3.898 18 H 0.075 0.925 19 O -0.577 6.577 20 H 0.029 0.971 21 H 0.062 0.938 22 H 0.042 0.958 23 H -0.013 1.013 24 H -0.019 1.019 25 H 0.260 0.740 26 H 0.385 0.615 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.057 -13.626 0.459 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.058 4.058 3 C 0.027 3.973 4 C -0.559 4.559 5 H 0.079 0.921 6 C -0.202 4.202 7 N -0.578 5.578 8 Si 0.783 3.217 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.204 1.204 12 C 0.057 3.943 13 H 0.058 0.942 14 O -0.376 6.376 15 C -0.181 4.181 16 C -0.184 4.184 17 C 0.044 3.956 18 H 0.093 0.907 19 O -0.384 6.384 20 H 0.048 0.952 21 H 0.081 0.919 22 H 0.061 0.939 23 H 0.005 0.995 24 H 0.000 1.000 25 H 0.069 0.931 26 H 0.233 0.767 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -0.417 -12.750 0.509 12.767 hybrid contribution 0.449 0.470 -0.585 0.875 sum 0.033 -12.279 -0.077 12.280 Atomic orbital electron populations 1.21356 0.94263 1.00367 0.99877 1.21233 0.96325 0.95867 0.92384 1.18638 0.93473 0.90590 0.94561 1.21742 1.29519 0.96652 1.07979 0.92122 1.25952 0.95684 0.98801 0.99716 1.70150 1.38161 1.11477 1.37968 0.85506 0.78255 0.78456 0.79509 1.18705 1.20688 1.20371 1.22261 0.86959 0.93635 0.91427 0.94214 1.86541 1.34053 1.76258 1.40744 1.22982 1.00343 0.98218 0.96540 1.23057 0.97600 1.00462 0.97274 1.22813 0.95770 0.89597 0.87444 0.90690 1.86726 1.86823 1.37080 1.27742 0.95156 0.91934 0.93855 0.99488 1.00037 0.93140 0.76693 0.90054 0.88783 0.92400 0.88226 0.76630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.29 7.17 71.98 0.52 -3.77 16 2 C -0.06 -2.49 0.64 -51.46 -0.03 -2.53 16 3 C 0.06 3.61 3.20 29.85 0.10 3.71 16 4 C -0.52 -30.78 7.49 25.60 0.19 -30.59 16 5 H 0.06 3.52 6.47 -2.91 -0.02 3.50 16 6 C 0.00 -0.29 5.46 84.66 0.46 0.17 16 7 N -0.94 -59.81 13.29 21.45 0.28 -59.53 16 8 Si 0.96 46.40 29.54 68.60 2.03 48.43 16 9 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 C 0.12 4.32 3.33 31.32 0.10 4.42 16 13 H 0.04 1.73 7.19 -2.39 -0.02 1.71 16 14 O -0.57 -19.12 11.43 -148.98 -1.70 -20.82 16 15 C -0.14 -3.88 6.55 31.67 0.21 -3.67 16 16 C -0.15 -4.15 6.62 31.88 0.21 -3.94 16 17 C 0.10 3.55 3.61 31.67 0.11 3.66 16 18 H 0.08 2.24 7.85 -2.39 -0.02 2.22 16 19 O -0.58 -21.77 11.79 -148.98 -1.76 -23.53 16 20 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.06 2.26 7.75 -2.39 -0.02 2.25 16 22 H 0.04 2.01 6.41 -2.38 -0.02 2.00 16 23 H -0.01 -0.84 7.50 -2.39 -0.02 -0.86 16 24 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 25 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 26 H 0.38 8.90 9.11 -74.06 -0.67 8.23 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.09 2.12 8.08 -2.39 -0.02 2.11 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.39 9.68 9.12 -74.06 -0.68 9.00 16 Total: -1.00 -74.09 249.94 0.50 -73.59 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -0.22 Total: 14.40 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 1.87 Total: -32.53 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 0.28 Total: -59.53 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -3.46 Total: -44.35 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -74.09 0.50 -73.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238254071.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.923 kcal (2) G-P(sol) polarization free energy of solvation -74.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds