Wall clock time and date at job start Mon Mar 30 2020 03:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47232 * 2 1 4 4 C 1.37743 * 120.11542 * 265.23943 * 3 2 1 5 5 C 1.38523 * 120.22198 * 180.27767 * 4 3 2 6 6 C 1.38565 * 120.43814 * 359.74000 * 5 4 3 7 7 C 1.37694 * 120.22425 * 359.97438 * 6 5 4 8 8 C 1.40362 * 120.11474 * 84.99843 * 3 2 1 9 9 C 1.43205 * 120.21190 * 0.02562 * 8 3 2 10 10 C 3.59829 * 90.33969 * 74.36978 * 2 1 3 11 11 C 4.72742 * 86.15263 * 85.90036 * 2 1 3 12 12 H 1.08004 * 119.99589 * 272.63690 * 11 10 9 13 13 C 1.40656 * 120.00150 * 92.91690 * 11 10 9 14 14 N 1.30537 * 120.00074 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00168 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47086 * 59.99732 * 15 13 11 17 17 H 1.48503 * 109.47155 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46879 * 299.99676 * 15 13 11 19 19 H 1.08997 * 109.47050 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.46806 * 299.99917 * 1 2 3 21 21 H 1.08995 * 109.47267 * 59.99610 * 1 2 3 22 22 H 1.08998 * 109.46806 * 240.00083 * 2 1 3 23 23 H 1.08996 * 109.47390 * 119.99851 * 2 1 3 24 24 H 1.08009 * 119.88943 * 359.97438 * 4 3 2 25 25 H 1.08002 * 119.77723 * 179.75686 * 5 4 3 26 26 H 1.08008 * 119.88549 * 180.02562 * 6 5 4 27 27 H 1.07991 * 120.11694 * 180.02562 * 7 6 5 28 28 H 0.96996 * 119.99904 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3560 2.0394 -1.1874 5 6 2.8234 3.3434 -1.1895 6 6 2.9652 4.0402 -0.0002 7 6 2.6415 3.4415 1.1968 8 6 2.1673 2.1200 1.2095 9 6 1.8293 1.4876 2.4491 10 6 1.5514 0.9695 3.4652 11 6 1.2128 0.3372 4.7047 12 1 1.4290 0.8321 5.6400 13 6 0.6042 -0.9308 4.7042 14 7 0.3474 -1.5312 3.5739 15 14 0.1632 -1.7559 6.3211 16 1 -0.7920 -0.8997 7.0694 17 1 -0.4630 -3.0747 6.0493 18 1 1.3935 -1.9489 7.1300 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 2.2496 1.5043 -2.1196 25 1 3.0787 3.8202 -2.1243 26 1 3.3301 5.0567 -0.0122 27 1 2.7523 3.9863 2.1226 28 1 -0.0727 -2.4054 3.5735 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238308840.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:37 Heat of formation + Delta-G solvation = 23.202976 kcal Electronic energy + Delta-G solvation = -11603.467249 eV Core-core repulsion = 9583.569694 eV Total energy + Delta-G solvation = -2019.897555 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 200.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.02426 -35.75943 -34.91253 -33.60718 -31.09461 -30.14734 -27.67191 -24.74044 -23.63145 -21.75195 -20.38978 -18.12685 -17.07592 -16.38392 -16.27807 -15.35576 -14.74190 -14.45285 -14.28237 -14.02997 -13.78089 -13.17460 -13.12642 -12.94875 -12.66042 -12.23638 -12.06286 -11.93447 -11.68874 -11.61758 -10.92470 -10.16527 -9.60133 -9.15465 -8.71646 -6.58760 0.35283 0.61592 1.36894 1.41154 1.51965 2.16011 2.30575 2.61335 2.97103 3.79491 4.01910 4.06848 4.12895 4.31353 4.38566 4.58482 4.68965 4.71103 4.82012 5.01522 5.10943 5.20035 5.22086 5.37695 5.44491 5.64434 5.70596 5.95345 6.06048 6.26510 6.48155 6.73987 7.65517 8.38509 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.050950 B = 0.008459 C = 0.007411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.431319 B = 3309.308441 C = 3777.152176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.070 4.070 3 C -0.116 4.116 4 C -0.108 4.108 5 C -0.145 4.145 6 C -0.110 4.110 7 C -0.157 4.157 8 C 0.061 3.939 9 C -0.396 4.396 10 C 0.005 3.995 11 C -0.475 4.475 12 H 0.098 0.902 13 C 0.032 3.968 14 N -0.845 5.845 15 Si 1.007 2.993 16 H -0.255 1.255 17 H -0.265 1.265 18 H -0.255 1.255 19 H 0.054 0.946 20 H 0.017 0.983 21 H 0.068 0.932 22 H 0.087 0.913 23 H 0.034 0.966 24 H 0.147 0.853 25 H 0.156 0.844 26 H 0.150 0.850 27 H 0.109 0.891 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.379 3.168 -6.936 7.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.107 4.107 3 C -0.116 4.116 4 C -0.125 4.125 5 C -0.163 4.163 6 C -0.128 4.128 7 C -0.176 4.176 8 C 0.061 3.939 9 C -0.399 4.399 10 C 0.004 3.996 11 C -0.505 4.505 12 H 0.116 0.884 13 C -0.181 4.181 14 N -0.471 5.471 15 Si 0.826 3.174 16 H -0.179 1.179 17 H -0.189 1.189 18 H -0.179 1.179 19 H 0.074 0.926 20 H 0.037 0.963 21 H 0.087 0.913 22 H 0.105 0.895 23 H 0.053 0.947 24 H 0.164 0.836 25 H 0.174 0.826 26 H 0.168 0.832 27 H 0.127 0.873 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.282 2.961 -7.052 7.755 hybrid contribution -0.247 -0.470 1.012 1.143 sum 1.035 2.491 -6.040 6.615 Atomic orbital electron populations 1.21439 0.94926 1.01061 1.00312 1.20295 0.96372 0.92824 1.01221 1.20221 1.02185 0.96618 0.92565 1.21158 0.98934 0.95861 0.96595 1.21479 1.01570 0.94445 0.98811 1.21251 0.99411 1.00693 0.91439 1.21344 1.03247 0.93773 0.99196 1.16464 0.96411 0.93037 0.87952 1.19161 1.19018 1.06753 0.94951 1.20538 0.91530 0.93584 0.93964 1.18759 1.40200 1.02550 0.88988 0.88447 1.27098 0.92161 0.96193 1.02653 1.69695 1.32356 1.14918 1.30166 0.84899 0.79635 0.77335 0.75567 1.17866 1.18907 1.17850 0.92646 0.96327 0.91268 0.89482 0.94737 0.83579 0.82633 0.83215 0.87252 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.90 71.98 0.71 -4.22 15 2 C -0.07 -2.95 5.59 29.85 0.17 -2.79 15 3 C -0.12 -4.87 5.18 -19.46 -0.10 -4.97 15 4 C -0.11 -3.48 9.66 22.22 0.21 -3.26 15 5 C -0.15 -4.10 10.05 22.42 0.23 -3.87 15 6 C -0.11 -3.43 10.02 22.22 0.22 -3.21 15 7 C -0.16 -6.43 9.79 22.67 0.22 -6.20 15 8 C 0.06 2.99 5.78 -20.99 -0.12 2.87 15 9 C -0.40 -23.18 11.68 30.02 0.35 -22.83 15 10 C 0.01 0.33 13.02 30.02 0.39 0.72 15 11 C -0.47 -27.75 9.61 24.11 0.23 -27.52 15 12 H 0.10 5.29 7.86 -2.91 -0.02 5.27 15 13 C 0.03 1.72 5.51 85.48 0.47 2.19 15 14 N -0.85 -47.38 13.26 21.96 0.29 -47.09 15 15 Si 1.01 39.30 29.57 68.60 2.03 41.33 15 16 H -0.25 -9.48 7.11 99.48 0.71 -8.78 15 17 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 18 H -0.25 -9.47 7.11 99.48 0.71 -8.76 15 19 H 0.05 2.15 8.14 -2.39 -0.02 2.13 15 20 H 0.02 0.88 7.97 -2.39 -0.02 0.86 15 21 H 0.07 2.36 8.14 -2.39 -0.02 2.34 15 22 H 0.09 2.99 8.05 -2.39 -0.02 2.97 15 23 H 0.03 1.77 7.30 -2.39 -0.02 1.76 15 24 H 0.15 3.67 8.06 -2.91 -0.02 3.65 15 25 H 0.16 3.03 8.06 -2.91 -0.02 3.01 15 26 H 0.15 3.47 8.06 -2.91 -0.02 3.45 15 27 H 0.11 4.39 8.06 -2.92 -0.02 4.36 15 28 H 0.29 14.53 8.29 -92.71 -0.77 13.76 15 Total: -1.00 -68.26 257.92 6.45 -61.81 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 1.14 Total: 17.04 kcal Atomic # 6 Polarization: -76.08 SS G_CDS: 2.99 Total: -73.09 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.29 Total: -47.09 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -68.26 6.45 -61.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238308840.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.012 kcal (2) G-P(sol) polarization free energy of solvation -68.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds