Wall clock time and date at job start Mon Mar 30 2020 02:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30555 * 1 3 3 Si 1.86795 * 120.00148 * 2 1 4 4 H 1.48500 * 109.47032 * 274.98490 * 3 2 1 5 5 H 1.48499 * 109.47443 * 34.98305 * 3 2 1 6 6 H 1.48505 * 109.47458 * 154.98800 * 3 2 1 7 7 C 1.40385 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99791 * 186.16590 * 7 2 1 9 9 C 1.40486 * 119.99868 * 6.17403 * 7 2 1 10 10 N 1.33677 * 120.52785 * 353.39226 * 9 7 2 11 11 C 1.31639 * 122.28154 * 180.02562 * 10 9 7 12 12 C 1.37929 * 122.75514 * 359.97438 * 11 10 9 13 13 C 1.40831 * 119.59862 * 0.02562 * 12 11 10 14 14 N 1.33339 * 122.05909 * 180.02562 * 13 12 11 15 15 C 1.31327 * 121.08986 * 179.97438 * 14 13 12 16 16 C 1.39174 * 121.72849 * 359.71797 * 15 14 13 17 17 C 1.37158 * 119.91999 * 0.56478 * 16 15 14 18 18 C 1.39680 * 118.00634 * 359.45666 * 17 16 15 19 19 H 0.97005 * 119.99792 * 0.02562 * 1 2 3 20 20 H 1.07993 * 118.61883 * 180.02562 * 11 10 9 21 21 H 1.08008 * 120.19812 * 179.97438 * 12 11 10 22 22 H 1.08007 * 119.13927 * 179.97438 * 15 14 13 23 23 H 1.07995 * 120.04428 * 180.29914 * 16 15 14 24 24 H 1.07999 * 120.99801 * 179.72284 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2396 1.6177 0.0000 4 1 2.3817 2.1072 -1.3948 5 1 1.4937 2.6200 0.8027 6 1 3.5859 1.4120 0.5920 7 6 2.0074 -1.2158 0.0005 8 1 3.0828 -1.2184 0.1010 9 6 1.3111 -2.4289 -0.1298 10 7 -0.0255 -2.4488 -0.1228 11 6 -0.7127 -3.5652 -0.2419 12 6 -0.1130 -4.7992 -0.3834 13 6 1.2922 -4.8915 -0.4033 14 7 1.9230 -6.0585 -0.5381 15 6 3.2346 -6.1224 -0.5547 16 6 4.0245 -4.9824 -0.4390 17 6 3.4341 -3.7531 -0.2918 18 6 2.0387 -3.6934 -0.2750 19 1 -0.4850 0.8401 -0.0004 20 1 -1.7913 -3.5126 -0.2291 21 1 -0.7174 -5.6894 -0.4775 22 1 3.7128 -7.0845 -0.6651 23 1 5.1009 -5.0660 -0.4609 24 1 4.0303 -2.8577 -0.1961 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238551426.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:47 Heat of formation + Delta-G solvation = 30.829043 kcal Electronic energy + Delta-G solvation = -11829.135957 eV Core-core repulsion = 9706.028750 eV Total energy + Delta-G solvation = -2123.107207 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.064 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.16327 -38.21522 -35.77190 -33.85040 -31.73340 -31.08560 -27.92201 -25.01932 -24.36105 -22.63055 -20.00786 -18.44321 -17.75718 -17.24182 -16.71125 -15.34019 -15.08022 -15.01317 -14.66822 -13.97010 -13.74715 -13.44965 -13.09044 -12.80125 -12.73904 -12.27224 -11.93582 -11.41444 -10.96400 -10.19731 -9.84504 -9.58738 -9.16465 -8.53111 -6.71544 -0.03289 0.37863 1.23662 1.40452 1.57641 1.60586 2.13802 2.51009 2.96370 3.71833 3.85939 4.06269 4.21431 4.30683 4.37363 4.48734 4.74626 4.94876 5.03913 5.25424 5.31174 5.44649 5.65031 5.78445 6.03790 6.15500 6.41047 6.70788 7.31176 8.06741 8.20684 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.044268 B = 0.012203 C = 0.009606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.364112 B = 2293.962878 C = 2914.141495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.014 3.986 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.243 1.243 7 C -0.393 4.393 8 H 0.115 0.885 9 C 0.233 3.767 10 N -0.565 5.565 11 C 0.154 3.846 12 C -0.360 4.360 13 C 0.173 3.827 14 N -0.543 5.543 15 C 0.125 3.875 16 C -0.236 4.236 17 C -0.030 4.030 18 C -0.239 4.239 19 H 0.292 0.708 20 H 0.139 0.861 21 H 0.110 0.890 22 H 0.184 0.816 23 H 0.166 0.834 24 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.189 0.919 -0.201 7.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.166 1.166 7 C -0.422 4.422 8 H 0.132 0.868 9 C 0.105 3.895 10 N -0.281 5.281 11 C -0.006 4.006 12 C -0.387 4.387 13 C 0.048 3.952 14 N -0.255 5.255 15 C -0.043 4.043 16 C -0.257 4.257 17 C -0.056 4.056 18 C -0.244 4.244 19 H 0.103 0.897 20 H 0.157 0.843 21 H 0.128 0.872 22 H 0.201 0.799 23 H 0.183 0.817 24 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.936 1.078 -0.177 6.036 hybrid contribution 0.566 0.264 -0.048 0.626 sum 6.502 1.342 -0.225 6.643 Atomic orbital electron populations 1.70135 1.09643 1.30779 1.23046 1.27387 0.95859 1.05300 0.92749 0.84908 0.79361 0.74209 0.79701 1.18529 1.18926 1.16603 1.20342 0.96489 0.89738 1.35631 0.86752 1.20301 0.88958 0.91164 0.89067 1.68664 1.07346 1.26960 1.25123 1.22563 0.99806 0.88251 0.90003 1.21019 0.92387 0.98553 1.26711 1.18919 0.94762 0.88314 0.93206 1.68017 1.11955 1.27030 1.18470 1.23458 0.88974 1.00050 0.91814 1.21970 1.02374 0.92484 1.08826 1.21463 0.92618 0.99382 0.92153 1.21016 0.96121 0.95875 1.11416 0.89673 0.84337 0.87167 0.79886 0.81667 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -35.76 11.53 21.90 0.25 -35.51 14 2 C 0.01 0.63 5.49 85.41 0.47 1.10 14 3 Si 1.00 33.01 29.57 68.60 2.03 35.04 14 4 H -0.26 -8.40 7.11 99.48 0.71 -7.69 14 5 H -0.26 -8.42 7.11 99.48 0.71 -7.71 14 6 H -0.24 -7.44 7.11 99.48 0.71 -6.74 14 7 C -0.39 -19.29 8.85 23.34 0.21 -19.08 14 8 H 0.11 4.91 6.31 -2.91 -0.02 4.89 14 9 C 0.23 12.68 6.72 41.60 0.28 12.96 14 10 N -0.56 -31.88 7.92 -185.24 -1.47 -33.35 14 11 C 0.15 7.98 11.06 84.65 0.94 8.92 14 12 C -0.36 -18.51 10.11 22.83 0.23 -18.28 14 13 C 0.17 8.94 6.63 40.42 0.27 9.21 14 14 N -0.54 -25.09 10.38 -188.58 -1.96 -27.05 14 15 C 0.13 4.56 11.14 84.99 0.95 5.50 14 16 C -0.24 -8.01 10.04 22.24 0.22 -7.78 14 17 C -0.03 -1.22 9.54 22.36 0.21 -1.01 14 18 C -0.24 -12.07 5.91 -19.88 -0.12 -12.19 14 19 H 0.29 12.83 8.29 -92.70 -0.77 12.06 14 20 H 0.14 6.31 8.06 -2.91 -0.02 6.28 14 21 H 0.11 5.27 8.06 -2.91 -0.02 5.25 14 22 H 0.18 4.82 8.06 -2.91 -0.02 4.80 14 23 H 0.17 3.97 8.06 -2.91 -0.02 3.95 14 24 H 0.15 5.18 6.56 -2.91 -0.02 5.17 14 Total: -1.00 -64.99 219.59 3.73 -61.25 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 1.22 Total: 20.25 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 3.66 Total: -20.64 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -3.17 Total: -95.90 kcal Atomic # 14 Polarization: 33.01 SS G_CDS: 2.03 Total: 35.04 kcal Total: -64.99 3.73 -61.25 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238551426.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.081 kcal (2) G-P(sol) polarization free energy of solvation -64.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds