Wall clock time and date at job start Mon Mar 30 2020 03:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47300 * 2 1 4 4 C 1.53002 * 109.47005 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.50739 * 59.67887 * 4 3 2 6 6 O 1.43370 * 109.63252 * 299.36597 * 4 3 2 7 7 C 1.44237 * 107.30289 * 239.41921 * 6 4 3 8 8 C 1.54919 * 103.05631 * 338.61476 * 7 6 4 9 9 H 1.09000 * 110.97789 * 277.38496 * 8 7 6 10 10 C 1.50695 * 110.97565 * 153.64118 * 8 7 6 11 11 H 1.08004 * 120.00546 * 3.38804 * 10 8 7 12 12 C 1.37885 * 119.99721 * 183.11055 * 10 8 7 13 13 N 1.31514 * 120.00035 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99853 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47093 * 60.00328 * 14 12 10 16 16 H 1.48495 * 109.47002 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47239 * 300.00048 * 14 12 10 18 18 O 1.43746 * 109.63096 * 179.97438 * 4 3 2 19 19 H 1.08998 * 109.46886 * 300.00522 * 1 2 3 20 20 H 1.09000 * 109.46691 * 60.00117 * 1 2 3 21 21 H 1.08995 * 109.47360 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47357 * 239.99354 * 2 1 3 23 23 H 1.09000 * 109.46691 * 119.99883 * 2 1 3 24 24 H 1.09000 * 109.47091 * 60.00091 * 3 2 1 25 25 H 1.09000 * 109.47153 * 299.99600 * 3 2 1 26 26 H 1.09001 * 109.47099 * 179.61644 * 5 4 3 27 27 H 1.08999 * 109.47365 * 299.61845 * 5 4 3 28 28 H 1.09006 * 109.46875 * 59.61807 * 5 4 3 29 29 H 1.08998 * 110.72927 * 220.21382 * 7 6 4 30 30 H 1.09002 * 110.68339 * 96.99371 * 7 6 4 31 31 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0815 0.7141 -1.2439 6 8 4.0513 0.7804 1.1778 7 6 4.8550 1.7309 1.9064 8 6 5.2463 2.7637 0.8200 9 1 6.1055 2.4186 0.2448 10 6 5.5176 4.1138 1.4320 11 1 5.4799 4.2383 2.5042 12 6 5.8196 5.1891 0.6234 13 7 5.8704 5.0366 -0.6818 14 14 6.1552 6.8629 1.3820 15 1 7.3187 6.7662 2.2996 16 1 6.4523 7.8430 0.3068 17 1 4.9607 7.3102 2.1426 18 8 4.0531 2.7963 0.0000 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.6768 1.9563 0.8900 25 1 1.6768 1.9563 -0.8900 26 1 5.1715 0.7203 -1.2463 27 1 3.7241 -0.3156 -1.2350 28 1 3.7133 1.2188 -2.1372 29 1 5.7424 1.2503 2.3183 30 1 4.2707 2.2044 2.6954 31 1 6.0824 5.7932 -1.2506 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258567305.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:19 Heat of formation + Delta-G solvation = -111.064531 kcal Electronic energy + Delta-G solvation = -13565.589785 eV Core-core repulsion = 11232.561035 eV Total energy + Delta-G solvation = -2333.028750 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.35122 -34.83311 -33.76296 -32.56247 -30.44719 -27.91573 -26.29540 -24.67254 -21.94900 -21.08833 -19.40160 -16.86208 -15.93205 -15.21921 -14.71265 -14.63065 -14.19572 -13.37103 -13.04670 -12.63394 -12.42857 -12.20694 -11.64609 -11.52302 -11.28051 -11.22064 -11.00439 -10.88178 -10.65602 -10.53921 -10.20929 -10.05451 -9.28587 -8.87484 -8.67592 -8.24038 -6.13298 -4.28108 3.27300 3.31955 3.34198 4.32527 4.55812 4.91753 5.25444 5.31410 5.42297 5.63554 5.74816 5.85506 6.04522 6.08521 6.15173 6.17843 6.23122 6.28158 6.33182 6.46089 6.53994 6.68296 6.73075 6.85436 7.01076 7.40833 7.76418 8.10074 8.48313 8.81770 9.43511 10.94787 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.053349 B = 0.009254 C = 0.009115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.720084 B = 3025.051184 C = 3071.013366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.116 4.116 4 C 0.242 3.758 5 C -0.164 4.164 6 O -0.400 6.400 7 C 0.023 3.977 8 C 0.185 3.815 9 H 0.040 0.960 10 C -0.537 4.537 11 H 0.068 0.932 12 C 0.078 3.922 13 N -0.862 5.862 14 Si 0.899 3.101 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.274 1.274 18 O -0.355 6.355 19 H 0.052 0.948 20 H 0.051 0.949 21 H 0.049 0.951 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 -6.925 0.640 8.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.154 4.154 4 C 0.164 3.836 5 C -0.222 4.222 6 O -0.322 6.322 7 C -0.053 4.053 8 C 0.130 3.870 9 H 0.057 0.943 10 C -0.574 4.574 11 H 0.086 0.914 12 C -0.128 4.128 13 N -0.497 5.497 14 Si 0.726 3.274 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 O -0.275 6.275 19 H 0.071 0.929 20 H 0.070 0.930 21 H 0.068 0.932 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.501 -6.863 0.396 8.805 hybrid contribution 0.300 0.969 0.312 1.061 sum -5.201 -5.894 0.707 7.892 Atomic orbital electron populations 1.21775 0.96384 1.00953 1.01607 1.21490 0.94976 0.96898 1.02339 1.21813 0.94150 0.96721 1.02709 1.23119 0.92243 0.82729 0.85541 1.22344 1.01975 0.99908 0.97938 1.88685 1.69002 1.38133 1.36342 1.24310 0.93806 0.90538 0.96669 1.21408 0.85054 0.94877 0.85615 0.94276 1.20836 1.49917 0.93414 0.93206 0.91402 1.25088 0.93588 0.99396 0.94760 1.70019 1.45043 1.31483 1.03197 0.86562 0.78933 0.83039 0.78909 1.19899 1.21027 1.19922 1.89582 1.43678 1.22142 1.72134 0.92923 0.92991 0.93175 0.92046 0.91442 0.91531 0.91151 0.92326 0.92249 0.91579 0.90477 0.92037 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.80 5.44 -26.73 -0.15 -1.94 16 3 C -0.12 -2.14 4.87 -26.73 -0.13 -2.27 16 4 C 0.24 5.23 1.14 -26.73 -0.03 5.20 16 5 C -0.16 -3.15 8.82 37.16 0.33 -2.82 16 6 O -0.40 -8.71 10.23 -59.03 -0.60 -9.31 16 7 C 0.02 0.52 7.52 38.17 0.29 0.80 16 8 C 0.19 4.90 3.26 -26.87 -0.09 4.81 16 9 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 10 C -0.54 -15.04 8.84 -34.44 -0.30 -15.34 16 11 H 0.07 1.82 7.78 -52.48 -0.41 1.41 16 12 C 0.08 2.21 5.44 -17.82 -0.10 2.11 16 13 N -0.86 -25.45 13.08 55.43 0.73 -24.72 16 14 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 O -0.35 -9.46 10.46 -59.03 -0.62 -10.08 16 19 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 20 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.87 6.44 -51.93 -0.33 0.54 16 23 H 0.07 1.06 7.71 -51.93 -0.40 0.66 16 24 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.06 0.97 6.45 -51.93 -0.33 0.64 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.06 1.36 8.02 -51.93 -0.42 0.94 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 257.84 15.07 3.89 3.89 Total: -1.00 -30.05 257.84 -6.28 -36.33 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -4.83 Total: -1.28 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 0.19 Total: -10.94 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.73 Total: -24.72 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -1.22 Total: -19.39 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.05 -6.28 -36.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258567305.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.736 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds