Wall clock time and date at job start Mon Mar 30 2020 03:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47300 * 2 1 4 4 C 1.53002 * 109.47005 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.50739 * 59.67887 * 4 3 2 6 6 O 1.43370 * 109.63252 * 299.36597 * 4 3 2 7 7 C 1.44237 * 107.30289 * 239.41921 * 6 4 3 8 8 C 1.54919 * 103.05631 * 338.61476 * 7 6 4 9 9 H 1.09000 * 110.97789 * 277.38496 * 8 7 6 10 10 C 1.50695 * 110.97565 * 153.64118 * 8 7 6 11 11 H 1.08004 * 120.00546 * 3.38804 * 10 8 7 12 12 C 1.37885 * 119.99721 * 183.11055 * 10 8 7 13 13 N 1.31514 * 120.00035 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99853 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47093 * 60.00328 * 14 12 10 16 16 H 1.48495 * 109.47002 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47239 * 300.00048 * 14 12 10 18 18 O 1.43746 * 109.63096 * 179.97438 * 4 3 2 19 19 H 1.08998 * 109.46886 * 300.00522 * 1 2 3 20 20 H 1.09000 * 109.46691 * 60.00117 * 1 2 3 21 21 H 1.08995 * 109.47360 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47357 * 239.99354 * 2 1 3 23 23 H 1.09000 * 109.46691 * 119.99883 * 2 1 3 24 24 H 1.09000 * 109.47091 * 60.00091 * 3 2 1 25 25 H 1.09000 * 109.47153 * 299.99600 * 3 2 1 26 26 H 1.09001 * 109.47099 * 179.61644 * 5 4 3 27 27 H 1.08999 * 109.47365 * 299.61845 * 5 4 3 28 28 H 1.09006 * 109.46875 * 59.61807 * 5 4 3 29 29 H 1.08998 * 110.72927 * 220.21382 * 7 6 4 30 30 H 1.09002 * 110.68339 * 96.99371 * 7 6 4 31 31 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0815 0.7141 -1.2439 6 8 4.0513 0.7804 1.1778 7 6 4.8550 1.7309 1.9064 8 6 5.2463 2.7637 0.8200 9 1 6.1055 2.4186 0.2448 10 6 5.5176 4.1138 1.4320 11 1 5.4799 4.2383 2.5042 12 6 5.8196 5.1891 0.6234 13 7 5.8704 5.0366 -0.6818 14 14 6.1552 6.8629 1.3820 15 1 7.3187 6.7662 2.2996 16 1 6.4523 7.8430 0.3068 17 1 4.9607 7.3102 2.1426 18 8 4.0531 2.7963 0.0000 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.6768 1.9563 0.8900 25 1 1.6768 1.9563 -0.8900 26 1 5.1715 0.7203 -1.2463 27 1 3.7241 -0.3156 -1.2350 28 1 3.7133 1.2188 -2.1372 29 1 5.7424 1.2503 2.3183 30 1 4.2707 2.2044 2.6954 31 1 6.0824 5.7932 -1.2506 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258567305.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:18 Heat of formation + Delta-G solvation = -130.039023 kcal Electronic energy + Delta-G solvation = -13566.412581 eV Core-core repulsion = 11232.561035 eV Total energy + Delta-G solvation = -2333.851546 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.15027 -36.33630 -35.59198 -34.58044 -32.04773 -29.79399 -27.69285 -26.66476 -23.40282 -22.92205 -20.99252 -18.93456 -17.77084 -17.04409 -16.54212 -16.06990 -15.86546 -15.09516 -14.62951 -14.28458 -14.01380 -13.93456 -13.21392 -13.03823 -12.95208 -12.78034 -12.68648 -12.64304 -12.34023 -12.08625 -11.83103 -11.49179 -11.18682 -10.85727 -10.60856 -10.15018 -8.25612 -6.48655 1.40448 1.43833 1.51770 2.35849 2.76975 3.04954 3.49378 3.95882 4.02776 4.21608 4.23702 4.36291 4.45516 4.52512 4.59127 4.71514 4.77761 4.87294 4.99179 5.06536 5.08607 5.15549 5.30916 5.39414 5.44672 5.49376 5.61705 6.01995 6.52387 6.76998 7.27943 8.83429 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.053349 B = 0.009254 C = 0.009115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.720084 B = 3025.051184 C = 3071.013366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.112 4.112 4 C 0.226 3.774 5 C -0.159 4.159 6 O -0.397 6.397 7 C 0.033 3.967 8 C 0.178 3.822 9 H 0.010 0.990 10 C -0.560 4.560 11 H 0.075 0.925 12 C 0.024 3.976 13 N -0.902 5.902 14 Si 0.972 3.028 15 H -0.260 1.260 16 H -0.281 1.281 17 H -0.269 1.269 18 O -0.389 6.389 19 H 0.050 0.950 20 H 0.057 0.943 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.196 -7.328 1.233 9.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.150 4.150 4 C 0.149 3.851 5 C -0.216 4.216 6 O -0.319 6.319 7 C -0.043 4.043 8 C 0.123 3.877 9 H 0.028 0.972 10 C -0.597 4.597 11 H 0.093 0.907 12 C -0.179 4.179 13 N -0.538 5.538 14 Si 0.795 3.205 15 H -0.184 1.184 16 H -0.206 1.206 17 H -0.194 1.194 18 O -0.310 6.310 19 H 0.069 0.931 20 H 0.077 0.923 21 H 0.090 0.910 22 H 0.091 0.909 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.304 -7.286 1.000 9.686 hybrid contribution 0.533 1.028 0.102 1.162 sum -5.770 -6.258 1.102 8.584 Atomic orbital electron populations 1.21745 0.94191 1.02483 1.01906 1.21451 0.96846 0.94135 1.02544 1.21824 0.91735 0.99241 1.02201 1.23612 0.94211 0.81019 0.86230 1.22309 1.00836 1.01547 0.96910 1.88663 1.68971 1.37800 1.36477 1.24211 0.94768 0.89841 0.95507 1.21299 0.84455 0.95513 0.86461 0.97206 1.21268 1.50101 0.94475 0.93815 0.90681 1.26034 0.93143 1.03615 0.95139 1.70158 1.46219 1.32704 1.04726 0.85423 0.79205 0.77722 0.78166 1.18409 1.20620 1.19400 1.89503 1.43588 1.25350 1.72568 0.93059 0.92344 0.91030 0.90889 0.92105 0.92793 0.90941 0.94074 0.89059 0.91197 0.88103 0.91718 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.91 71.98 0.71 -2.50 16 2 C -0.11 -3.11 5.44 30.60 0.17 -2.94 16 3 C -0.11 -4.02 4.87 30.59 0.15 -3.87 16 4 C 0.23 9.74 1.14 30.59 0.04 9.77 16 5 C -0.16 -5.97 8.82 71.98 0.63 -5.33 16 6 O -0.40 -16.98 10.23 -126.22 -1.29 -18.27 16 7 C 0.03 1.46 7.52 72.64 0.55 2.01 16 8 C 0.18 9.59 3.26 30.50 0.10 9.69 16 9 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 10 C -0.56 -31.68 8.84 25.60 0.23 -31.46 16 11 H 0.08 4.00 7.78 -2.91 -0.02 3.98 16 12 C 0.02 1.34 5.44 84.66 0.46 1.80 16 13 N -0.90 -54.30 13.08 21.45 0.28 -54.02 16 14 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 15 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 16 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 O -0.39 -21.14 10.46 -126.22 -1.32 -22.46 16 19 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 20 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.07 1.85 6.44 -2.39 -0.02 1.83 16 23 H 0.06 1.77 7.71 -2.39 -0.02 1.76 16 24 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.09 2.80 6.45 -2.39 -0.02 2.79 16 28 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 29 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 30 H 0.06 2.81 8.02 -2.39 -0.02 2.79 16 31 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -64.57 257.84 3.81 -60.75 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.08 Total: 11.42 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: 3.03 Total: -22.85 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.28 Total: -54.02 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -2.61 Total: -40.73 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -64.57 3.81 -60.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258567305.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.285 kcal (2) G-P(sol) polarization free energy of solvation -64.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds