Wall clock time and date at job start Mon Mar 30 2020 03:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53009 * 109.46978 * 2 1 4 4 C 1.53000 * 109.46846 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.63329 * 58.93866 * 4 3 2 6 6 O 1.43751 * 109.63355 * 298.54342 * 4 3 2 7 7 C 1.44785 * 104.81683 * 215.81241 * 6 4 3 8 8 C 1.54912 * 101.75488 * 36.08022 * 7 6 4 9 9 H 1.09008 * 110.69203 * 82.85745 * 8 7 6 10 10 C 1.50698 * 110.69686 * 206.06069 * 8 7 6 11 11 H 1.08005 * 119.99966 * 359.97438 * 10 8 7 12 12 C 1.37877 * 120.00203 * 180.02562 * 10 8 7 13 13 N 1.31510 * 120.00104 * 180.02562 * 12 10 8 14 14 Si 1.86799 * 120.00074 * 359.97438 * 12 10 8 15 15 H 1.48507 * 109.47176 * 89.99985 * 14 12 10 16 16 H 1.48497 * 109.47581 * 210.00802 * 14 12 10 17 17 H 1.48500 * 109.47015 * 330.00747 * 14 12 10 18 18 O 1.43370 * 109.62668 * 179.17827 * 4 3 2 19 19 H 1.09001 * 109.47467 * 60.00549 * 1 2 3 20 20 H 1.09002 * 109.47178 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.47563 * 300.00002 * 1 2 3 22 22 H 1.08994 * 109.47395 * 239.99815 * 2 1 3 23 23 H 1.09001 * 109.47467 * 119.99451 * 2 1 3 24 24 H 1.08994 * 109.47209 * 59.99701 * 3 2 1 25 25 H 1.08997 * 109.46618 * 299.99473 * 3 2 1 26 26 H 1.09008 * 109.46882 * 300.31301 * 5 4 3 27 27 H 1.08998 * 109.47107 * 60.30059 * 5 4 3 28 28 H 1.08988 * 109.47706 * 180.30612 * 5 4 3 29 29 H 1.09002 * 110.97919 * 154.21154 * 7 6 4 30 30 H 1.08997 * 110.97766 * 277.95651 * 7 6 4 31 31 H 0.97009 * 119.99943 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0834 0.6992 -1.2354 6 8 4.0534 0.7954 1.1884 7 6 5.2470 1.5304 1.5507 8 6 4.8561 2.9783 1.1627 9 1 4.2723 3.4454 1.9560 10 6 6.0830 3.7957 0.8504 11 1 7.0627 3.3459 0.9162 12 6 5.9549 5.1181 0.4818 13 7 7.0256 5.8314 0.2089 14 14 4.2605 5.8964 0.3688 15 1 3.8977 6.4856 1.6828 16 1 4.2732 6.9622 -0.6652 17 1 3.2634 4.8599 -0.0010 18 8 4.0515 2.7928 -0.0200 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 1.6765 1.9564 0.8899 25 1 1.6766 1.9563 -0.8900 26 1 3.7169 -0.3273 -1.2200 27 1 3.7256 1.1992 -2.1354 28 1 5.1733 0.6960 -1.2305 29 1 5.4439 1.4525 2.6200 30 1 6.1057 1.1898 0.9721 31 1 6.9354 6.7617 -0.0508 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258567307.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:27 Heat of formation + Delta-G solvation = -105.882045 kcal Electronic energy + Delta-G solvation = -13658.419663 eV Core-core repulsion = 11325.615642 eV Total energy + Delta-G solvation = -2332.804021 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.62800 -35.00923 -34.02475 -32.59838 -30.71627 -28.25882 -26.47547 -24.81125 -22.04673 -20.92695 -19.73489 -17.05693 -16.18833 -15.64319 -15.12178 -14.58271 -13.75106 -13.63065 -13.04606 -13.02437 -12.56105 -12.10759 -12.00535 -11.91004 -11.59474 -11.45389 -11.09299 -10.87746 -10.70164 -10.41880 -10.25506 -9.79030 -9.59131 -9.13486 -8.67342 -8.39489 -6.20181 -4.30825 3.32422 3.38674 3.61754 4.35803 4.44826 4.71888 5.16820 5.19908 5.29605 5.39251 5.60707 5.71618 5.89544 5.92142 5.92972 5.99366 6.07784 6.10704 6.17798 6.30331 6.39143 6.44474 6.52908 6.67435 6.75637 7.08663 7.53938 8.21540 8.31792 8.79066 9.42358 10.89913 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.045356 B = 0.011508 C = 0.010209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.185802 B = 2432.405858 C = 2742.099279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.118 4.118 4 C 0.246 3.754 5 C -0.167 4.167 6 O -0.391 6.391 7 C 0.032 3.968 8 C 0.148 3.852 9 H 0.041 0.959 10 C -0.528 4.528 11 H 0.081 0.919 12 C 0.087 3.913 13 N -0.887 5.887 14 Si 0.871 3.129 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.231 1.231 18 O -0.381 6.381 19 H 0.051 0.949 20 H 0.050 0.950 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.600 -9.054 -0.411 13.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.156 4.156 4 C 0.168 3.832 5 C -0.224 4.224 6 O -0.313 6.313 7 C -0.044 4.044 8 C 0.093 3.907 9 H 0.058 0.942 10 C -0.565 4.565 11 H 0.099 0.901 12 C -0.118 4.118 13 N -0.523 5.523 14 Si 0.697 3.303 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.154 1.154 18 O -0.303 6.303 19 H 0.070 0.930 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.672 -8.920 -0.522 13.168 hybrid contribution -0.523 0.611 -0.089 0.809 sum -10.195 -8.310 -0.611 13.167 Atomic orbital electron populations 1.21778 0.96283 1.01101 1.01617 1.21517 0.95134 0.96734 1.02469 1.21888 0.93884 0.97072 1.02789 1.23115 0.92197 0.82208 0.85640 1.22360 1.02270 0.99838 0.97949 1.89057 1.42216 1.55821 1.44168 1.24297 0.87630 0.91734 1.00766 1.21702 0.91008 0.93127 0.84817 0.94178 1.20892 0.91438 0.94839 1.49320 0.90084 1.25021 0.97227 0.96992 0.92560 1.69911 1.29199 1.08922 1.44282 0.86912 0.85946 0.79617 0.77795 1.20730 1.21410 1.15421 1.89244 1.68780 1.25421 1.46849 0.92983 0.93054 0.92895 0.91892 0.91348 0.91498 0.90886 0.91847 0.91649 0.91945 0.89083 0.91449 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.15 0.37 -1.35 16 2 C -0.12 -1.67 5.43 -26.73 -0.15 -1.81 16 3 C -0.12 -2.00 4.88 -26.73 -0.13 -2.13 16 4 C 0.25 4.90 1.14 -26.73 -0.03 4.87 16 5 C -0.17 -2.92 8.82 37.16 0.33 -2.59 16 6 O -0.39 -7.90 10.40 -59.04 -0.61 -8.51 16 7 C 0.03 0.67 7.33 38.17 0.28 0.94 16 8 C 0.15 3.64 2.86 -26.88 -0.08 3.56 16 9 H 0.04 0.99 7.45 -51.92 -0.39 0.60 16 10 C -0.53 -14.93 9.39 -34.44 -0.32 -15.26 16 11 H 0.08 2.42 8.00 -52.48 -0.42 2.00 16 12 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 13 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 14 Si 0.87 21.91 27.06 -169.99 -4.60 17.31 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.23 -5.74 5.65 56.52 0.32 -5.43 16 18 O -0.38 -9.22 8.14 -59.04 -0.48 -9.70 16 19 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 22 H 0.06 0.82 6.41 -51.93 -0.33 0.48 16 23 H 0.07 0.99 7.73 -51.93 -0.40 0.59 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.06 0.95 6.41 -51.92 -0.33 0.62 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.15 8.14 -51.94 -0.42 0.73 16 29 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 30 H 0.07 1.41 8.02 -51.93 -0.42 0.99 16 31 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 252.11 15.07 3.80 3.80 Total: -1.00 -30.36 252.11 -5.84 -36.20 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -4.89 Total: -1.61 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 0.17 Total: -11.34 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.77 Total: -26.15 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -1.09 Total: -18.21 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.60 Total: 17.31 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.36 -5.84 -36.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258567307.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.684 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds