Wall clock time and date at job start Mon Mar 30 2020 03:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53009 * 109.46978 * 2 1 4 4 C 1.53000 * 109.46846 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.63329 * 58.93866 * 4 3 2 6 6 O 1.43751 * 109.63355 * 298.54342 * 4 3 2 7 7 C 1.44785 * 104.81683 * 215.81241 * 6 4 3 8 8 C 1.54912 * 101.75488 * 36.08022 * 7 6 4 9 9 H 1.09008 * 110.69203 * 82.85745 * 8 7 6 10 10 C 1.50698 * 110.69686 * 206.06069 * 8 7 6 11 11 H 1.08005 * 119.99966 * 359.97438 * 10 8 7 12 12 C 1.37877 * 120.00203 * 180.02562 * 10 8 7 13 13 N 1.31510 * 120.00104 * 180.02562 * 12 10 8 14 14 Si 1.86799 * 120.00074 * 359.97438 * 12 10 8 15 15 H 1.48507 * 109.47176 * 89.99985 * 14 12 10 16 16 H 1.48497 * 109.47581 * 210.00802 * 14 12 10 17 17 H 1.48500 * 109.47015 * 330.00747 * 14 12 10 18 18 O 1.43370 * 109.62668 * 179.17827 * 4 3 2 19 19 H 1.09001 * 109.47467 * 60.00549 * 1 2 3 20 20 H 1.09002 * 109.47178 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.47563 * 300.00002 * 1 2 3 22 22 H 1.08994 * 109.47395 * 239.99815 * 2 1 3 23 23 H 1.09001 * 109.47467 * 119.99451 * 2 1 3 24 24 H 1.08994 * 109.47209 * 59.99701 * 3 2 1 25 25 H 1.08997 * 109.46618 * 299.99473 * 3 2 1 26 26 H 1.09008 * 109.46882 * 300.31301 * 5 4 3 27 27 H 1.08998 * 109.47107 * 60.30059 * 5 4 3 28 28 H 1.08988 * 109.47706 * 180.30612 * 5 4 3 29 29 H 1.09002 * 110.97919 * 154.21154 * 7 6 4 30 30 H 1.08997 * 110.97766 * 277.95651 * 7 6 4 31 31 H 0.97009 * 119.99943 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0834 0.6992 -1.2354 6 8 4.0534 0.7954 1.1884 7 6 5.2470 1.5304 1.5507 8 6 4.8561 2.9783 1.1627 9 1 4.2723 3.4454 1.9560 10 6 6.0830 3.7957 0.8504 11 1 7.0627 3.3459 0.9162 12 6 5.9549 5.1181 0.4818 13 7 7.0256 5.8314 0.2089 14 14 4.2605 5.8964 0.3688 15 1 3.8977 6.4856 1.6828 16 1 4.2732 6.9622 -0.6652 17 1 3.2634 4.8599 -0.0010 18 8 4.0515 2.7928 -0.0200 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 1.6765 1.9564 0.8899 25 1 1.6766 1.9563 -0.8900 26 1 3.7169 -0.3273 -1.2200 27 1 3.7256 1.1992 -2.1354 28 1 5.1733 0.6960 -1.2305 29 1 5.4439 1.4525 2.6200 30 1 6.1057 1.1898 0.9721 31 1 6.9354 6.7617 -0.0508 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258567307.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:25 Heat of formation + Delta-G solvation = -125.536683 kcal Electronic energy + Delta-G solvation = -13659.271952 eV Core-core repulsion = 11325.615642 eV Total energy + Delta-G solvation = -2333.656310 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.29626 -36.40142 -35.70601 -34.67012 -32.23965 -30.00772 -27.75480 -26.71193 -23.28747 -22.80382 -21.17818 -19.20142 -17.87043 -17.31123 -16.65700 -16.22068 -15.32274 -15.19252 -14.75587 -14.58584 -14.35058 -13.55777 -13.53003 -13.25013 -13.06838 -12.89403 -12.71721 -12.42252 -12.30537 -11.88578 -11.82449 -11.58736 -11.32527 -10.89130 -10.80852 -10.16141 -8.42102 -6.57200 1.33191 1.35920 1.62253 2.35881 2.66154 2.96875 3.38984 3.92729 3.94353 4.09524 4.20315 4.27302 4.40864 4.46069 4.59162 4.67531 4.76784 4.81918 4.94820 5.02390 5.04344 5.13761 5.24102 5.31864 5.40610 5.48762 5.53300 6.07462 6.44932 6.59966 7.19701 8.71500 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.045356 B = 0.011508 C = 0.010209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.185802 B = 2432.405858 C = 2742.099279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.116 4.116 4 C 0.230 3.770 5 C -0.163 4.163 6 O -0.387 6.387 7 C 0.039 3.961 8 C 0.147 3.853 9 H 0.043 0.957 10 C -0.536 4.536 11 H 0.049 0.951 12 C 0.034 3.966 13 N -0.931 5.931 14 Si 0.935 3.065 15 H -0.269 1.269 16 H -0.286 1.286 17 H -0.226 1.226 18 O -0.404 6.404 19 H 0.058 0.942 20 H 0.068 0.932 21 H 0.051 0.949 22 H 0.074 0.926 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.116 0.884 30 H 0.062 0.938 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.806 -10.154 -0.524 15.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.154 4.154 4 C 0.154 3.846 5 C -0.221 4.221 6 O -0.308 6.308 7 C -0.038 4.038 8 C 0.091 3.909 9 H 0.061 0.939 10 C -0.573 4.573 11 H 0.068 0.932 12 C -0.167 4.167 13 N -0.569 5.569 14 Si 0.758 3.242 15 H -0.195 1.195 16 H -0.212 1.212 17 H -0.149 1.149 18 O -0.327 6.327 19 H 0.077 0.923 20 H 0.087 0.913 21 H 0.070 0.930 22 H 0.092 0.908 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.134 0.866 30 H 0.080 0.920 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.884 -10.041 -0.630 15.571 hybrid contribution 0.210 0.873 -0.065 0.900 sum -11.673 -9.168 -0.695 14.860 Atomic orbital electron populations 1.21750 0.94347 1.02423 1.01929 1.21482 0.96789 0.94351 1.02626 1.21907 0.91446 0.99341 1.02683 1.23633 0.94173 0.80504 0.86339 1.22356 1.01212 1.01355 0.97166 1.89059 1.41737 1.55523 1.44451 1.24206 0.87728 0.89603 1.02217 1.21547 0.89733 0.94643 0.84967 0.93941 1.21115 0.91912 0.95495 1.48802 0.93248 1.25869 1.00863 0.97660 0.92341 1.70024 1.31361 1.09493 1.46051 0.85929 0.81397 0.78664 0.78233 1.19484 1.21201 1.14896 1.89143 1.68869 1.28146 1.46519 0.92294 0.91261 0.93027 0.90775 0.92107 0.92381 0.90266 0.88947 0.90848 0.93626 0.86608 0.91965 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.91 71.98 0.71 -2.14 16 2 C -0.12 -2.80 5.43 30.59 0.17 -2.63 16 3 C -0.12 -3.62 4.88 30.60 0.15 -3.47 16 4 C 0.23 8.73 1.14 30.59 0.03 8.76 16 5 C -0.16 -5.38 8.82 71.98 0.63 -4.75 16 6 O -0.39 -14.84 10.40 -126.22 -1.31 -16.15 16 7 C 0.04 1.57 7.33 72.64 0.53 2.11 16 8 C 0.15 7.09 2.86 30.50 0.09 7.18 16 9 H 0.04 2.04 7.45 -2.38 -0.02 2.02 16 10 C -0.54 -30.82 9.39 25.60 0.24 -30.58 16 11 H 0.05 3.06 8.00 -2.91 -0.02 3.04 16 12 C 0.03 1.97 5.47 84.66 0.46 2.43 16 13 N -0.93 -57.69 13.96 21.45 0.30 -57.39 16 14 Si 0.93 45.28 27.06 68.60 1.86 47.14 16 15 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 17 H -0.23 -10.69 5.65 99.48 0.56 -10.13 16 18 O -0.40 -19.09 8.14 -126.22 -1.03 -20.12 16 19 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 20 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 22 H 0.07 1.63 6.41 -2.39 -0.02 1.62 16 23 H 0.06 1.58 7.73 -2.39 -0.02 1.56 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.09 2.47 6.41 -2.38 -0.02 2.46 16 27 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 30 H 0.06 2.59 8.02 -2.39 -0.02 2.57 16 31 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 Total: -1.00 -64.73 252.11 3.78 -60.95 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.94 Total: 8.67 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 3.02 Total: -23.10 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.30 Total: -57.39 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -2.34 Total: -36.28 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.86 Total: 47.14 kcal Total: -64.73 3.78 -60.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258567307.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.585 kcal (2) G-P(sol) polarization free energy of solvation -64.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds