Wall clock time and date at job start Mon Mar 30 2020 03:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47061 * 2 1 4 4 C 1.52998 * 109.47400 * 119.99609 * 2 1 3 5 5 C 1.53005 * 109.50650 * 64.68554 * 4 2 1 6 6 O 1.43748 * 109.63300 * 304.36884 * 4 2 1 7 7 C 1.44785 * 104.81545 * 215.80550 * 6 4 2 8 8 C 1.54913 * 101.72120 * 36.10239 * 7 6 4 9 9 H 1.08996 * 110.84344 * 82.90397 * 8 7 6 10 10 C 1.50706 * 110.69209 * 206.04231 * 8 7 6 11 11 H 1.07995 * 120.00167 * 354.83187 * 10 8 7 12 12 C 1.37879 * 119.99394 * 175.10885 * 10 8 7 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47487 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47233 * 120.00158 * 14 12 10 17 17 H 1.48508 * 109.46883 * 239.99963 * 14 12 10 18 18 O 1.43366 * 109.63436 * 185.00177 * 4 2 1 19 19 H 1.08994 * 109.47364 * 300.00077 * 1 2 3 20 20 H 1.09004 * 109.47163 * 60.00320 * 1 2 3 21 21 H 1.09005 * 109.47015 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47529 * 240.00262 * 2 1 3 23 23 H 1.08994 * 109.47095 * 59.99758 * 3 2 1 24 24 H 1.08997 * 109.47073 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.46871 * 299.99860 * 3 2 1 26 26 H 1.08997 * 109.47504 * 179.61787 * 5 4 2 27 27 H 1.09006 * 109.46882 * 299.61653 * 5 4 2 28 28 H 1.08995 * 109.47343 * 59.61205 * 5 4 2 29 29 H 1.08997 * 110.97691 * 277.99173 * 7 6 4 30 30 H 1.09004 * 110.97819 * 154.21302 * 7 6 4 31 31 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6289 -2.1938 1.1927 6 8 1.4804 -0.1083 2.4230 7 6 2.5330 -0.1782 3.4147 8 6 3.7973 0.0458 2.5480 9 1 3.9673 1.1089 2.3776 10 6 5.0035 -0.5881 3.1919 11 1 4.9203 -1.0355 4.1713 12 6 6.2146 -0.5918 2.5328 13 7 6.3173 -0.0417 1.3427 14 14 7.7094 -1.3781 3.3306 15 1 7.3326 -1.9219 4.6600 16 1 8.2089 -2.4792 2.4684 17 1 8.7755 -0.3578 3.4977 18 8 3.4688 -0.6220 1.3131 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.6766 1.9563 0.8899 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.9984 -2.7086 2.0796 27 1 0.5419 -2.2665 1.1568 28 1 2.0535 -2.6556 0.3013 29 1 2.5554 -1.1580 3.8916 30 1 2.4233 0.6128 4.1567 31 1 7.1694 -0.0440 0.8793 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259003347.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:41 Heat of formation + Delta-G solvation = -106.266374 kcal Electronic energy + Delta-G solvation = -13928.390711 eV Core-core repulsion = 11595.570024 eV Total energy + Delta-G solvation = -2332.820687 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.49495 -34.67753 -33.77291 -32.37127 -29.76472 -28.04600 -26.32112 -24.71699 -22.33678 -21.11912 -19.09148 -16.73089 -15.94211 -15.48718 -14.73132 -14.18864 -13.69816 -13.28354 -12.80635 -12.65877 -12.17150 -11.85653 -11.72550 -11.64477 -11.42948 -11.11459 -10.95244 -10.67466 -10.59206 -10.33750 -10.26137 -10.10959 -9.28291 -8.92938 -8.62448 -8.04577 -6.09003 -4.23768 3.25803 3.33840 3.37213 4.35234 4.58918 4.96857 5.32477 5.44823 5.53960 5.68331 5.99465 6.05790 6.10100 6.16490 6.17901 6.21375 6.36440 6.37857 6.43876 6.50292 6.72705 6.76233 6.84700 6.95297 7.05441 7.49422 7.79655 8.14580 8.53891 8.89433 9.47960 10.98501 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.053524 B = 0.011056 C = 0.010507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.001398 B = 2531.954484 C = 2664.266494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.140 4.140 4 C 0.249 3.751 5 C -0.166 4.166 6 O -0.391 6.391 7 C 0.019 3.981 8 C 0.189 3.811 9 H 0.040 0.960 10 C -0.541 4.541 11 H 0.066 0.934 12 C 0.080 3.920 13 N -0.859 5.859 14 Si 0.894 3.106 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 O -0.353 6.353 19 H 0.060 0.940 20 H 0.047 0.953 21 H 0.051 0.949 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.702 -0.378 -0.967 7.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 C -0.197 4.197 4 C 0.171 3.829 5 C -0.223 4.223 6 O -0.313 6.313 7 C -0.057 4.057 8 C 0.134 3.866 9 H 0.057 0.943 10 C -0.579 4.579 11 H 0.084 0.916 12 C -0.127 4.127 13 N -0.495 5.495 14 Si 0.721 3.279 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 O -0.275 6.275 19 H 0.079 0.921 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.093 0.907 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.652 -0.317 -1.256 7.761 hybrid contribution 0.893 -0.523 0.458 1.132 sum -6.759 -0.839 -0.798 6.857 Atomic orbital electron populations 1.21791 0.95328 1.01252 1.01418 1.21371 0.95256 0.97399 0.97244 1.21697 1.02715 0.94934 1.00371 1.23102 0.83050 0.90807 0.85991 1.22351 1.00568 0.96775 1.02650 1.89025 1.38385 1.81217 1.22637 1.24493 0.87593 1.00957 0.92692 1.21233 0.91406 0.94278 0.79655 0.94253 1.21036 0.92622 1.41072 1.03150 0.91579 1.25054 0.98900 0.94189 0.94533 1.70043 1.25169 1.41783 1.12490 0.86518 0.82538 0.79237 0.79566 1.19562 1.20765 1.20789 1.89221 1.15410 1.79760 1.43061 0.92119 0.93342 0.93030 0.90693 0.92853 0.91094 0.93917 0.92275 0.92206 0.91794 0.92208 0.89713 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.76 37.15 0.33 -1.83 16 2 C -0.09 -1.74 2.54 -90.62 -0.23 -1.97 16 3 C -0.14 -2.63 8.89 37.16 0.33 -2.30 16 4 C 0.25 5.29 0.73 -26.73 -0.02 5.27 16 5 C -0.17 -3.12 8.93 37.16 0.33 -2.78 16 6 O -0.39 -8.35 9.68 -59.04 -0.57 -8.92 16 7 C 0.02 0.41 7.33 38.17 0.28 0.69 16 8 C 0.19 4.92 3.51 -26.87 -0.09 4.82 16 9 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 10 C -0.54 -15.03 8.83 -34.44 -0.30 -15.33 16 11 H 0.07 1.77 7.78 -52.49 -0.41 1.36 16 12 C 0.08 2.24 5.42 -17.82 -0.10 2.14 16 13 N -0.86 -25.24 12.95 55.43 0.72 -24.52 16 14 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 O -0.35 -9.22 9.25 -59.04 -0.55 -9.76 16 19 H 0.06 0.97 7.58 -51.93 -0.39 0.57 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.05 0.73 6.57 -51.93 -0.34 0.39 16 22 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 23 H 0.05 1.01 7.81 -51.93 -0.41 0.60 16 24 H 0.07 1.55 7.57 -51.93 -0.39 1.15 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.06 0.97 6.58 -51.93 -0.34 0.63 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.28 8.04 -51.93 -0.42 0.87 16 30 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 254.89 15.07 3.84 3.84 Total: -1.00 -29.68 254.89 -5.85 -35.53 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.79 Total: -0.98 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 0.52 Total: -11.28 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.72 Total: -24.52 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -1.12 Total: -18.68 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.68 -5.85 -35.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259003347.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.740 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds