Wall clock time and date at job start Mon Mar 30 2020 02:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86789 * 120.00129 * 2 1 4 4 H 1.48501 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47335 * 299.99655 * 3 2 1 6 6 H 1.48498 * 109.47379 * 59.99804 * 3 2 1 7 7 C 1.37876 * 119.99445 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99613 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00476 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.43498 * 57.45770 * 9 7 2 11 11 C 1.54894 * 110.60010 * 294.84254 * 9 7 2 12 12 C 1.55013 * 102.75068 * 203.30983 * 11 9 7 13 13 C 1.54263 * 104.14119 * 37.95307 * 12 11 9 14 14 H 1.09002 * 110.03499 * 95.68289 * 13 12 11 15 15 C 1.50704 * 110.03078 * 217.06572 * 13 12 11 16 16 O 1.20833 * 119.99857 * 117.90725 * 15 13 12 17 17 O 1.34221 * 119.99935 * 297.90154 * 15 13 12 18 18 C 1.53876 * 106.63651 * 336.37227 * 13 12 11 19 19 H 0.96998 * 119.99525 * 0.02562 * 1 2 3 20 20 H 0.96700 * 114.00358 * 302.54387 * 10 9 7 21 21 H 1.08997 * 110.75486 * 321.63563 * 11 9 7 22 22 H 1.08996 * 110.75526 * 85.00671 * 11 9 7 23 23 H 1.08996 * 110.51029 * 279.29376 * 12 11 9 24 24 H 1.09002 * 110.51988 * 156.61519 * 12 11 9 25 25 H 0.96703 * 117.00173 * 179.97438 * 17 15 13 26 26 H 1.09002 * 110.03233 * 119.31598 * 18 13 12 27 27 H 1.09001 * 110.03366 * 240.69213 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.3782 -2.5713 -1.1286 11 6 0.4505 -2.6662 1.3160 12 6 0.2717 -4.2029 1.4149 13 6 1.6101 -4.7718 0.9004 14 1 2.2721 -4.9860 1.7396 15 6 1.3651 -6.0271 0.1033 16 8 1.6668 -6.0687 -1.0661 17 8 0.8118 -7.0988 0.6922 18 6 2.2324 -3.6893 0.0011 19 1 -0.4849 0.8401 -0.0004 20 1 -0.2605 -1.8470 -1.1791 21 1 1.0195 -2.2879 2.1652 22 1 -0.5168 -2.1688 1.2454 23 1 -0.5517 -4.5331 0.7818 24 1 0.1025 -4.5020 2.4493 25 1 0.6737 -7.8807 0.1402 26 1 3.1964 -3.3782 0.4038 27 1 2.3572 -4.0718 -1.0119 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259523064.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:45 Heat of formation + Delta-G solvation = -158.316198 kcal Electronic energy + Delta-G solvation = -13335.556489 eV Core-core repulsion = 10864.645658 eV Total energy + Delta-G solvation = -2470.910831 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.03785 -37.44123 -35.71371 -33.58035 -32.01217 -28.15781 -27.98705 -24.61211 -22.17255 -19.83712 -18.70463 -17.73301 -17.04799 -16.28905 -15.40944 -14.85205 -14.19315 -13.77823 -13.53779 -12.83894 -12.04465 -11.79447 -11.26119 -11.21426 -10.97893 -10.81078 -10.66169 -10.51912 -10.39132 -10.14651 -9.84144 -9.78540 -9.15237 -8.54689 -7.99434 -6.17810 -4.24849 2.65485 3.23420 3.32222 3.36437 3.46022 4.33412 5.08371 5.29109 5.41730 5.55731 5.95553 6.16583 6.25057 6.43826 6.49572 6.68302 6.75474 6.90191 7.02727 7.20703 7.51018 7.57620 7.87449 8.19130 8.29926 8.77596 9.43844 9.64115 10.89262 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.068428 B = 0.009979 C = 0.009717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.093737 B = 2805.326544 C = 2880.797317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.251 3.749 10 O -0.588 6.588 11 C -0.128 4.128 12 C -0.110 4.110 13 C -0.083 4.083 14 H 0.099 0.901 15 C 0.483 3.517 16 O -0.512 6.512 17 O -0.522 6.522 18 C -0.107 4.107 19 H 0.266 0.734 20 H 0.381 0.619 21 H 0.060 0.940 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.400 0.600 26 H 0.073 0.927 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.598 -7.519 3.733 8.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.571 4.571 8 H 0.080 0.920 9 C 0.211 3.789 10 O -0.397 6.397 11 C -0.166 4.166 12 C -0.148 4.148 13 C -0.102 4.102 14 H 0.117 0.883 15 C 0.326 3.674 16 O -0.399 6.399 17 O -0.333 6.333 18 C -0.144 4.144 19 H 0.076 0.924 20 H 0.232 0.768 21 H 0.079 0.921 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.257 0.743 26 H 0.092 0.908 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.953 -7.594 3.533 8.430 hybrid contribution 0.004 0.865 -0.181 0.884 sum 0.957 -6.729 3.352 7.578 Atomic orbital electron populations 1.69624 1.05951 1.27275 1.51151 1.25022 0.94998 0.99457 0.93854 0.86416 0.80137 0.83084 0.77612 1.19696 1.20883 1.20934 1.21763 0.93647 0.90875 1.50811 0.91994 1.19315 0.86052 0.90971 0.82581 1.86133 1.51718 1.53326 1.48547 1.23072 1.02185 0.90798 1.00579 1.22387 0.94084 0.98891 0.99407 1.21801 1.00675 0.89296 0.98417 0.88328 1.23854 0.72405 0.84372 0.86812 1.90670 1.48525 1.82687 1.18029 1.84589 1.75776 1.24936 1.48024 1.22296 0.98724 0.93756 0.99671 0.92390 0.76844 0.92135 0.90667 0.92010 0.92159 0.74265 0.90806 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.11 10.53 55.43 0.58 -23.53 15 2 C 0.07 1.81 5.27 -17.82 -0.09 1.71 15 3 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 15 7 C -0.53 -14.35 8.20 -34.44 -0.28 -14.63 15 8 H 0.06 1.65 7.55 -52.49 -0.40 1.26 15 9 C 0.25 6.27 0.83 -90.11 -0.08 6.20 15 10 O -0.59 -15.89 13.04 -35.23 -0.46 -16.35 15 11 C -0.13 -2.88 5.47 -24.67 -0.13 -3.02 15 12 C -0.11 -2.07 6.32 -25.01 -0.16 -2.23 15 13 C -0.08 -1.53 3.40 -90.65 -0.31 -1.84 15 14 H 0.10 1.54 8.14 -51.93 -0.42 1.12 15 15 C 0.48 8.70 7.48 36.01 0.27 8.97 15 16 O -0.51 -10.83 15.97 -18.76 -0.30 -11.13 15 17 O -0.52 -7.28 13.40 -39.23 -0.53 -7.81 15 18 C -0.11 -2.36 5.71 -25.61 -0.15 -2.51 15 19 H 0.27 6.80 8.31 -40.82 -0.34 6.46 15 20 H 0.38 10.38 7.02 45.56 0.32 10.70 15 21 H 0.06 1.34 8.05 -51.93 -0.42 0.93 15 22 H 0.07 1.81 7.56 -51.93 -0.39 1.42 15 23 H 0.06 1.21 7.85 -51.93 -0.41 0.80 15 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 25 H 0.40 3.68 9.10 45.56 0.41 4.10 15 26 H 0.07 1.53 7.66 -51.93 -0.40 1.13 15 27 H 0.08 1.99 6.33 -51.93 -0.33 1.66 15 LS Contribution 232.18 15.07 3.50 3.50 Total: -1.00 -30.13 232.18 -4.74 -34.86 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -1.59 Total: 12.11 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -0.93 Total: -7.35 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 0.58 Total: -23.53 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -1.28 Total: -35.29 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -30.13 -4.74 -34.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259523064.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.452 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds