Wall clock time and date at job start Mon Mar 30 2020 02:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86789 * 120.00129 * 2 1 4 4 H 1.48501 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47335 * 299.99655 * 3 2 1 6 6 H 1.48498 * 109.47379 * 59.99804 * 3 2 1 7 7 C 1.37876 * 119.99445 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99613 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00476 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.43498 * 57.45770 * 9 7 2 11 11 C 1.54894 * 110.60010 * 294.84254 * 9 7 2 12 12 C 1.55013 * 102.75068 * 203.30983 * 11 9 7 13 13 C 1.54263 * 104.14119 * 37.95307 * 12 11 9 14 14 H 1.09002 * 110.03499 * 95.68289 * 13 12 11 15 15 C 1.50704 * 110.03078 * 217.06572 * 13 12 11 16 16 O 1.20833 * 119.99857 * 117.90725 * 15 13 12 17 17 O 1.34221 * 119.99935 * 297.90154 * 15 13 12 18 18 C 1.53876 * 106.63651 * 336.37227 * 13 12 11 19 19 H 0.96998 * 119.99525 * 0.02562 * 1 2 3 20 20 H 0.96700 * 114.00358 * 302.54387 * 10 9 7 21 21 H 1.08997 * 110.75486 * 321.63563 * 11 9 7 22 22 H 1.08996 * 110.75526 * 85.00671 * 11 9 7 23 23 H 1.08996 * 110.51029 * 279.29376 * 12 11 9 24 24 H 1.09002 * 110.51988 * 156.61519 * 12 11 9 25 25 H 0.96703 * 117.00173 * 179.97438 * 17 15 13 26 26 H 1.09002 * 110.03233 * 119.31598 * 18 13 12 27 27 H 1.09001 * 110.03366 * 240.69213 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.3782 -2.5713 -1.1286 11 6 0.4505 -2.6662 1.3160 12 6 0.2717 -4.2029 1.4149 13 6 1.6101 -4.7718 0.9004 14 1 2.2721 -4.9860 1.7396 15 6 1.3651 -6.0271 0.1033 16 8 1.6668 -6.0687 -1.0661 17 8 0.8118 -7.0988 0.6922 18 6 2.2324 -3.6893 0.0011 19 1 -0.4849 0.8401 -0.0004 20 1 -0.2605 -1.8470 -1.1791 21 1 1.0195 -2.2879 2.1652 22 1 -0.5168 -2.1688 1.2454 23 1 -0.5517 -4.5331 0.7818 24 1 0.1025 -4.5020 2.4493 25 1 0.6737 -7.8807 0.1402 26 1 3.1964 -3.3782 0.4038 27 1 2.3572 -4.0718 -1.0119 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259523064.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:42 Heat of formation + Delta-G solvation = -181.017094 kcal Electronic energy + Delta-G solvation = -13336.540874 eV Core-core repulsion = 10864.645658 eV Total energy + Delta-G solvation = -2471.895216 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.46565 -39.17110 -37.04890 -35.41944 -34.07462 -29.94158 -29.70096 -26.48720 -23.69981 -21.51024 -20.38128 -19.24908 -18.86022 -17.76160 -16.98505 -16.80271 -15.92956 -15.51237 -15.22394 -14.33267 -13.81026 -13.67728 -13.09803 -12.80089 -12.58899 -12.55735 -12.35633 -12.24924 -12.14171 -11.96241 -11.51777 -11.40586 -11.00773 -10.55686 -9.98666 -8.18584 -6.33205 1.26308 1.40976 1.44575 1.55056 2.18321 2.41303 3.06505 3.72845 3.84837 4.08634 4.32670 4.59275 4.69773 4.80102 4.95721 4.99234 5.12152 5.25274 5.45257 5.55641 5.64735 5.69520 5.91916 6.20166 6.72753 7.06841 7.38307 7.54321 8.86964 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.068428 B = 0.009979 C = 0.009717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.093737 B = 2805.326544 C = 2880.797317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.559 4.559 8 H 0.055 0.945 9 C 0.229 3.771 10 O -0.602 6.602 11 C -0.122 4.122 12 C -0.098 4.098 13 C -0.080 4.080 14 H 0.137 0.863 15 C 0.492 3.508 16 O -0.551 6.551 17 O -0.505 6.505 18 C -0.106 4.106 19 H 0.269 0.731 20 H 0.374 0.626 21 H 0.061 0.939 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.098 0.902 25 H 0.424 0.576 26 H 0.082 0.918 27 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 -8.218 5.042 9.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.173 4.173 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.597 4.597 8 H 0.074 0.926 9 C 0.190 3.810 10 O -0.411 6.411 11 C -0.160 4.160 12 C -0.136 4.136 13 C -0.099 4.099 14 H 0.155 0.845 15 C 0.336 3.664 16 O -0.442 6.442 17 O -0.318 6.318 18 C -0.144 4.144 19 H 0.078 0.922 20 H 0.224 0.776 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.116 0.884 25 H 0.285 0.715 26 H 0.101 0.899 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.258 -8.332 4.860 9.728 hybrid contribution -0.118 1.042 -0.596 1.206 sum 1.139 -7.290 4.264 8.522 Atomic orbital electron populations 1.69709 1.06858 1.28024 1.51057 1.25717 0.95837 1.02314 0.93469 0.85475 0.78929 0.79342 0.77632 1.19526 1.20907 1.20113 1.22055 0.93623 0.92381 1.51630 0.92636 1.19686 0.86633 0.91651 0.83052 1.86132 1.51920 1.53007 1.50018 1.22867 1.00390 0.93614 0.99117 1.22291 0.93960 0.95798 1.01530 1.21735 1.00833 0.88656 0.98709 0.84511 1.23623 0.71837 0.85038 0.85932 1.90673 1.50376 1.83507 1.19633 1.84506 1.74451 1.24991 1.47841 1.22211 0.98794 0.93960 0.99422 0.92190 0.77613 0.92051 0.92975 0.92974 0.88375 0.71466 0.89928 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.44 10.53 21.45 0.23 -49.22 15 2 C 0.03 1.40 5.27 84.65 0.45 1.84 15 3 Si 0.96 42.38 29.54 68.60 2.03 44.41 15 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 15 6 H -0.28 -11.75 7.11 99.48 0.71 -11.05 15 7 C -0.56 -30.31 8.20 25.60 0.21 -30.10 15 8 H 0.06 2.99 7.55 -2.91 -0.02 2.96 15 9 C 0.23 11.52 0.83 -10.47 -0.01 11.51 15 10 O -0.60 -33.26 13.04 -148.98 -1.94 -35.20 15 11 C -0.12 -5.39 5.47 31.93 0.17 -5.22 15 12 C -0.10 -3.46 6.32 31.71 0.20 -3.26 15 13 C -0.08 -2.77 3.40 -10.81 -0.04 -2.80 15 14 H 0.14 3.68 8.14 -2.39 -0.02 3.66 15 15 C 0.49 16.55 7.48 71.24 0.53 17.09 15 16 O -0.55 -22.85 15.97 21.94 0.35 -22.50 15 17 O -0.50 -12.22 13.40 -51.33 -0.69 -12.91 15 18 C -0.11 -4.64 5.71 31.32 0.18 -4.46 15 19 H 0.27 13.75 8.31 -92.71 -0.77 12.98 15 20 H 0.37 21.03 7.02 -74.06 -0.52 20.51 15 21 H 0.06 2.66 8.05 -2.39 -0.02 2.64 15 22 H 0.05 2.52 7.56 -2.39 -0.02 2.50 15 23 H 0.05 1.93 7.85 -2.39 -0.02 1.91 15 24 H 0.10 2.74 8.14 -2.39 -0.02 2.72 15 25 H 0.42 6.26 9.10 -74.06 -0.67 5.59 15 26 H 0.08 3.36 7.66 -2.39 -0.02 3.34 15 27 H 0.06 2.85 6.33 -2.39 -0.02 2.83 15 Total: -1.00 -64.66 232.18 1.68 -62.99 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.01 Total: 27.82 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 1.70 Total: -15.40 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.23 Total: -49.22 kcal Atomic # 8 Polarization: -68.33 SS G_CDS: -2.28 Total: -70.61 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -64.66 1.68 -62.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259523064.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.031 kcal (2) G-P(sol) polarization free energy of solvation -64.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds