Wall clock time and date at job start Mon Mar 30 2020 02:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00247 * 2 1 4 4 H 1.48496 * 109.46897 * 240.00278 * 3 2 1 5 5 H 1.48504 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47090 * 120.00028 * 3 2 1 7 7 C 1.37875 * 119.99380 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99582 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00624 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.00947 * 300.69889 * 9 7 2 11 11 C 1.54268 * 110.07327 * 62.11234 * 9 7 2 12 12 C 1.54887 * 104.19181 * 95.70306 * 11 9 7 13 13 C 1.54889 * 102.75166 * 37.93954 * 12 11 9 14 14 H 1.09001 * 110.59930 * 80.79249 * 13 12 11 15 15 C 1.50698 * 110.48928 * 203.37744 * 13 12 11 16 16 O 1.20828 * 119.99901 * 114.77141 * 15 13 12 17 17 O 1.34231 * 120.00340 * 294.77972 * 15 13 12 18 18 C 1.53870 * 110.03400 * 179.30986 * 9 7 2 19 19 H 0.97009 * 119.99561 * 359.97438 * 1 2 3 20 20 H 0.96700 * 114.00311 * 58.61006 * 10 9 7 21 21 H 1.09000 * 110.48115 * 214.38160 * 11 9 7 22 22 H 1.09000 * 110.48525 * 337.02220 * 11 9 7 23 23 H 1.09003 * 110.75396 * 279.62456 * 12 11 9 24 24 H 1.08996 * 110.75700 * 156.25624 * 12 11 9 25 25 H 0.96692 * 117.00425 * 179.97438 * 17 15 13 26 26 H 1.09000 * 110.03446 * 359.94852 * 18 9 7 27 27 H 1.09001 * 110.03134 * 121.38007 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.4123 -2.5796 1.1548 11 6 0.3997 -2.6192 -1.2805 12 6 1.2848 -3.4425 -2.2488 13 6 1.9541 -4.4739 -1.3069 14 1 1.2764 -5.3028 -1.1023 15 6 3.2393 -4.9814 -1.9084 16 8 4.2944 -4.7404 -1.3710 17 8 3.2120 -5.7011 -3.0411 18 6 2.2392 -3.6784 -0.0162 19 1 -0.4850 0.8402 0.0004 20 1 -0.2334 -1.8630 1.2226 21 1 -0.5309 -3.1470 -1.0720 22 1 0.1950 -1.6326 -1.6962 23 1 2.0344 -2.8076 -2.7214 24 1 0.6735 -3.9441 -2.9989 25 1 4.0616 -6.0044 -3.3891 26 1 3.2639 -3.3068 -0.0253 27 1 2.0791 -4.3122 0.8560 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259523068.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:53 Heat of formation + Delta-G solvation = -180.905476 kcal Electronic energy + Delta-G solvation = -13321.306869 eV Core-core repulsion = 10849.416493 eV Total energy + Delta-G solvation = -2471.890375 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.44716 -39.24504 -37.06057 -35.52998 -34.14939 -29.83759 -29.57087 -26.57549 -23.76351 -21.56137 -20.43683 -19.31701 -18.78884 -17.57186 -17.24017 -16.79662 -16.17594 -15.31363 -14.73441 -14.44651 -14.22104 -13.57588 -13.23301 -12.89614 -12.64414 -12.53967 -12.32919 -12.28375 -12.23940 -11.98225 -11.44301 -11.32470 -11.05219 -10.56293 -10.04889 -8.19872 -6.35646 1.23141 1.40221 1.41572 1.49227 2.16044 2.39700 3.03269 3.66985 3.84741 4.04965 4.33902 4.55832 4.69615 4.78430 4.89629 4.95288 5.09048 5.30361 5.43646 5.51898 5.63434 5.67648 5.93045 6.23362 6.70142 7.05802 7.35520 7.51216 8.83751 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.044119 B = 0.011432 C = 0.010500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.499709 B = 2448.601087 C = 2665.923417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.030 3.970 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.558 4.558 8 H 0.044 0.956 9 C 0.230 3.770 10 O -0.603 6.603 11 C -0.124 4.124 12 C -0.093 4.093 13 C -0.080 4.080 14 H 0.132 0.868 15 C 0.497 3.503 16 O -0.552 6.552 17 O -0.503 6.503 18 C -0.097 4.097 19 H 0.270 0.730 20 H 0.376 0.624 21 H 0.051 0.949 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.098 0.902 25 H 0.426 0.574 26 H 0.061 0.939 27 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.487 -7.276 -6.206 9.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.170 4.170 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.596 4.596 8 H 0.063 0.937 9 C 0.191 3.809 10 O -0.412 6.412 11 C -0.162 4.162 12 C -0.130 4.130 13 C -0.099 4.099 14 H 0.150 0.850 15 C 0.341 3.659 16 O -0.442 6.442 17 O -0.316 6.316 18 C -0.135 4.135 19 H 0.080 0.920 20 H 0.226 0.774 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.117 0.883 25 H 0.287 0.713 26 H 0.080 0.920 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.605 -7.502 -5.810 9.624 hybrid contribution 0.754 1.394 -0.058 1.586 sum 2.359 -6.107 -5.868 8.792 Atomic orbital electron populations 1.69708 1.06511 1.28192 1.50477 1.25630 0.95866 1.01943 0.93573 0.85696 0.78607 0.79297 0.78526 1.19940 1.20092 1.20392 1.22014 0.93103 0.92590 1.51864 0.93741 1.19504 0.86964 0.91585 0.82805 1.86103 1.52872 1.53658 1.48573 1.22754 0.97120 0.99316 0.97007 1.22303 0.98509 0.95455 0.96764 1.21834 0.92247 0.99839 0.95962 0.85019 1.23433 0.91235 0.73427 0.77799 1.90678 1.34510 1.56442 1.62618 1.84506 1.42747 1.65141 1.39243 1.22044 0.99578 0.96327 0.95534 0.92023 0.77402 0.93013 0.92206 0.92467 0.88346 0.71291 0.92023 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.48 10.25 21.45 0.22 -48.26 15 2 C 0.03 1.61 4.99 84.65 0.42 2.03 15 3 Si 0.95 42.96 29.54 68.60 2.03 44.99 15 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 5 H -0.28 -11.91 7.11 99.48 0.71 -11.21 15 6 H -0.28 -12.61 7.11 99.48 0.71 -11.91 15 7 C -0.56 -30.84 8.21 25.60 0.21 -30.63 15 8 H 0.04 2.53 7.33 -2.91 -0.02 2.51 15 9 C 0.23 11.55 0.98 -10.82 -0.01 11.54 15 10 O -0.60 -31.96 12.89 -148.98 -1.92 -33.88 15 11 C -0.12 -5.49 5.64 31.67 0.18 -5.31 15 12 C -0.09 -3.30 6.32 31.88 0.20 -3.10 15 13 C -0.08 -2.77 3.36 -10.47 -0.04 -2.80 15 14 H 0.13 3.82 8.14 -2.39 -0.02 3.80 15 15 C 0.50 16.09 7.62 71.24 0.54 16.63 15 16 O -0.55 -21.73 16.18 21.96 0.36 -21.38 15 17 O -0.50 -11.59 13.42 -51.42 -0.69 -12.28 15 18 C -0.10 -4.30 5.64 31.32 0.18 -4.12 15 19 H 0.27 13.71 8.31 -92.70 -0.77 12.94 15 20 H 0.38 20.26 7.14 -74.06 -0.53 19.73 15 21 H 0.05 2.19 8.08 -2.39 -0.02 2.17 15 22 H 0.06 2.96 6.48 -2.39 -0.02 2.95 15 23 H 0.06 2.15 8.05 -2.39 -0.02 2.13 15 24 H 0.10 2.80 8.14 -2.39 -0.02 2.78 15 25 H 0.43 5.68 9.10 -74.06 -0.67 5.00 15 26 H 0.06 2.97 6.08 -2.39 -0.01 2.95 15 27 H 0.06 2.67 7.95 -2.39 -0.02 2.65 15 Total: -1.00 -63.20 231.17 1.68 -61.52 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.00 Total: 25.04 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 1.69 Total: -15.76 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.22 Total: -48.26 kcal Atomic # 8 Polarization: -65.28 SS G_CDS: -2.25 Total: -67.53 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -63.20 1.68 -61.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259523068.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.383 kcal (2) G-P(sol) polarization free energy of solvation -63.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds