Wall clock time and date at job start Mon Mar 30 2020 03:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.48158 * 2 1 4 4 O 1.42899 * 109.48228 * 239.96291 * 2 1 3 5 5 C 1.42896 * 114.10069 * 301.17543 * 4 2 1 6 6 C 1.53094 * 109.41411 * 298.84497 * 5 4 2 7 7 C 1.53171 * 109.16635 * 57.60414 * 6 5 4 8 8 H 1.09004 * 109.54446 * 62.88911 * 7 6 5 9 9 O 1.42901 * 109.54314 * 183.15191 * 7 6 5 10 10 C 1.53092 * 109.48129 * 120.02055 * 2 1 3 11 11 H 1.09003 * 109.52220 * 302.40673 * 10 2 1 12 12 C 1.50702 * 109.52621 * 182.28146 * 10 2 1 13 13 H 1.08001 * 119.99890 * 329.56434 * 12 10 2 14 14 C 1.37877 * 119.99816 * 149.56151 * 12 10 2 15 15 N 1.31509 * 120.00473 * 354.27793 * 14 12 10 16 16 Si 1.86805 * 119.99481 * 174.27798 * 14 12 10 17 17 H 1.48502 * 109.46937 * 60.00051 * 16 14 12 18 18 H 1.48497 * 109.47317 * 299.99860 * 16 14 12 19 19 H 1.48501 * 109.46732 * 179.97438 * 16 14 12 20 20 H 1.09000 * 109.47044 * 299.97587 * 1 2 3 21 21 H 1.08996 * 109.46908 * 59.97835 * 1 2 3 22 22 H 1.09000 * 109.46596 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47431 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.46742 * 300.02144 * 3 2 1 25 25 H 1.08999 * 109.46943 * 60.02246 * 3 2 1 26 26 H 1.09003 * 109.48197 * 58.82044 * 5 4 2 27 27 H 1.09001 * 109.48649 * 178.84657 * 5 4 2 28 28 H 1.09008 * 109.52162 * 177.51730 * 6 5 4 29 29 H 1.09004 * 109.52262 * 297.69775 * 6 5 4 30 30 H 0.96694 * 114.00299 * 299.55348 * 9 7 6 31 31 H 0.97002 * 120.00123 * 5.73651 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4425 0.0000 4 8 2.0066 -0.6743 -1.1663 5 6 1.5646 -2.0286 -1.2788 6 6 2.0765 -2.8322 -0.0805 7 6 1.5758 -2.1811 1.2124 8 1 0.4867 -2.2178 1.2411 9 8 2.1091 -2.8817 2.3380 10 6 2.0406 -0.7221 1.2497 11 1 1.6430 -0.2348 2.1399 12 6 3.5465 -0.6739 1.2793 13 1 4.1044 -0.6507 0.3548 14 6 4.2121 -0.6594 2.4867 15 7 3.5343 -0.5740 3.6103 16 14 6.0770 -0.7612 2.5263 17 1 6.6514 0.3910 1.7860 18 1 6.5173 -2.0281 1.8891 19 1 6.5447 -0.7265 3.9353 20 1 -0.3633 0.5135 0.8902 21 1 -0.3633 0.5142 -0.8898 22 1 -0.3632 -1.0277 -0.0005 23 1 3.1302 1.4423 -0.0005 24 1 1.6767 1.9564 -0.8898 25 1 1.6774 1.9562 0.8902 26 1 0.4751 -2.0552 -1.2955 27 1 1.9530 -2.4624 -2.2002 28 1 1.7038 -3.8547 -0.1416 29 1 3.1665 -2.8400 -0.0859 30 1 1.8544 -3.8136 2.3781 31 1 2.5648 -0.6050 3.5955 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259556193.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:15 Heat of formation + Delta-G solvation = -104.684423 kcal Electronic energy + Delta-G solvation = -14280.786163 eV Core-core repulsion = 11948.034075 eV Total energy + Delta-G solvation = -2332.752088 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.33650 -35.68267 -33.44420 -31.94978 -30.76809 -27.41859 -26.53812 -24.00478 -22.44396 -20.94299 -18.57161 -16.69578 -16.17465 -15.19646 -14.82088 -14.20657 -13.57783 -13.50990 -13.36326 -12.47582 -12.32662 -11.76013 -11.51050 -11.37104 -11.15294 -10.99826 -10.68601 -10.65542 -10.29753 -10.00302 -9.54333 -9.42619 -9.10648 -8.50730 -8.26127 -7.98515 -6.09806 -3.77643 3.54317 3.57466 3.74851 4.52965 4.71196 5.25092 5.48070 5.55539 5.65032 5.72492 5.83559 5.85130 5.95020 6.08436 6.15242 6.35194 6.36666 6.41866 6.50571 6.63036 6.97562 7.03365 7.08577 7.23265 7.38795 8.11414 8.38972 8.63464 8.82189 9.13734 9.95122 11.30381 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.035369 B = 0.015890 C = 0.014280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.453425 B = 1761.745298 C = 1960.336881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.124 3.876 3 C -0.118 4.118 4 O -0.371 6.371 5 C 0.069 3.931 6 C -0.175 4.175 7 C 0.108 3.892 8 H 0.015 0.985 9 O -0.531 6.531 10 C 0.018 3.982 11 H 0.045 0.955 12 C -0.575 4.575 13 H 0.050 0.950 14 C 0.032 3.968 15 N -0.904 5.904 16 Si 1.063 2.937 17 H -0.292 1.292 18 H -0.291 1.291 19 H -0.287 1.287 20 H 0.060 0.940 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.077 0.923 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.345 0.655 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.163 -2.102 -6.663 8.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.085 3.915 3 C -0.175 4.175 4 O -0.290 6.290 5 C -0.008 4.008 6 C -0.213 4.213 7 C 0.048 3.952 8 H 0.033 0.967 9 O -0.332 6.332 10 C -0.001 4.001 11 H 0.063 0.937 12 C -0.613 4.613 13 H 0.068 0.932 14 C -0.173 4.173 15 N -0.539 5.539 16 Si 0.893 3.107 17 H -0.219 1.219 18 H -0.218 1.218 19 H -0.212 1.212 20 H 0.079 0.921 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.096 0.904 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.187 0.813 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.470 -1.342 -5.639 6.756 hybrid contribution -1.846 -1.035 -1.035 2.356 sum -5.316 -2.377 -6.674 8.857 Atomic orbital electron populations 1.22549 0.98327 1.01442 1.01498 1.21554 0.90053 0.93408 0.86460 1.21543 1.03551 0.92828 0.99622 1.87869 1.74039 1.23311 1.43780 1.22300 0.97108 0.83755 0.97627 1.22787 1.04177 0.97451 0.96914 1.22190 0.92272 0.96612 0.84116 0.96689 1.86925 1.76226 1.23732 1.46328 1.19425 0.98703 0.88734 0.93277 0.93748 1.21495 0.89499 1.55747 0.94568 0.93186 1.25529 1.06027 0.93335 0.92449 1.70691 1.09684 1.45120 1.28435 0.83651 0.75388 0.76187 0.75493 1.21873 1.21833 1.21230 0.92091 0.93055 0.92813 0.90440 0.94262 0.92277 0.94495 0.90314 0.93514 0.89397 0.81299 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 7.93 37.16 0.29 -2.93 16 2 C 0.12 2.65 0.79 -90.57 -0.07 2.58 16 3 C -0.12 -2.43 8.57 37.16 0.32 -2.11 16 4 O -0.37 -7.98 9.75 -35.23 -0.34 -8.32 16 5 C 0.07 1.27 6.52 37.21 0.24 1.51 16 6 C -0.18 -3.46 5.51 -26.59 -0.15 -3.61 16 7 C 0.11 2.39 2.93 -26.55 -0.08 2.31 16 8 H 0.02 0.32 6.62 -51.93 -0.34 -0.03 16 9 O -0.53 -12.56 11.93 -35.23 -0.42 -12.98 16 10 C 0.02 0.44 1.36 -91.63 -0.12 0.31 16 11 H 0.04 1.21 6.36 -51.93 -0.33 0.88 16 12 C -0.58 -15.96 5.38 -34.44 -0.19 -16.14 16 13 H 0.05 1.44 7.56 -52.49 -0.40 1.05 16 14 C 0.03 0.94 5.03 -17.82 -0.09 0.85 16 15 N -0.90 -27.67 13.34 55.43 0.74 -26.94 16 16 Si 1.06 26.22 29.91 -169.99 -5.08 21.13 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.92 4.97 -51.93 -0.26 0.66 16 23 H 0.08 1.75 7.14 -51.93 -0.37 1.38 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.04 0.61 6.34 -51.93 -0.33 0.28 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 29 H 0.09 1.99 7.39 -51.93 -0.38 1.61 16 30 H 0.34 6.27 9.09 45.56 0.41 6.68 16 31 H 0.27 8.37 6.22 -40.82 -0.25 8.12 16 LS Contribution 240.82 15.07 3.63 3.63 Total: -1.00 -31.75 240.82 -4.90 -36.65 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -3.58 Total: 4.06 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 0.16 Total: -17.23 kcal Atomic # 7 Polarization: -27.67 SS G_CDS: 0.74 Total: -26.94 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.76 Total: -21.30 kcal Atomic # 14 Polarization: 26.22 SS G_CDS: -5.08 Total: 21.13 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.75 -4.90 -36.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259556193.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.032 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds