Wall clock time and date at job start Mon Mar 30 2020 03:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.48158 * 2 1 4 4 O 1.42899 * 109.48228 * 239.96291 * 2 1 3 5 5 C 1.42896 * 114.10069 * 301.17543 * 4 2 1 6 6 C 1.53094 * 109.41411 * 298.84497 * 5 4 2 7 7 C 1.53171 * 109.16635 * 57.60414 * 6 5 4 8 8 H 1.09004 * 109.54446 * 62.88911 * 7 6 5 9 9 O 1.42901 * 109.54314 * 183.15191 * 7 6 5 10 10 C 1.53092 * 109.48129 * 120.02055 * 2 1 3 11 11 H 1.09003 * 109.52220 * 302.40673 * 10 2 1 12 12 C 1.50702 * 109.52621 * 182.28146 * 10 2 1 13 13 H 1.08001 * 119.99890 * 329.56434 * 12 10 2 14 14 C 1.37877 * 119.99816 * 149.56151 * 12 10 2 15 15 N 1.31509 * 120.00473 * 354.27793 * 14 12 10 16 16 Si 1.86805 * 119.99481 * 174.27798 * 14 12 10 17 17 H 1.48502 * 109.46937 * 60.00051 * 16 14 12 18 18 H 1.48497 * 109.47317 * 299.99860 * 16 14 12 19 19 H 1.48501 * 109.46732 * 179.97438 * 16 14 12 20 20 H 1.09000 * 109.47044 * 299.97587 * 1 2 3 21 21 H 1.08996 * 109.46908 * 59.97835 * 1 2 3 22 22 H 1.09000 * 109.46596 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47431 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.46742 * 300.02144 * 3 2 1 25 25 H 1.08999 * 109.46943 * 60.02246 * 3 2 1 26 26 H 1.09003 * 109.48197 * 58.82044 * 5 4 2 27 27 H 1.09001 * 109.48649 * 178.84657 * 5 4 2 28 28 H 1.09008 * 109.52162 * 177.51730 * 6 5 4 29 29 H 1.09004 * 109.52262 * 297.69775 * 6 5 4 30 30 H 0.96694 * 114.00299 * 299.55348 * 9 7 6 31 31 H 0.97002 * 120.00123 * 5.73651 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4425 0.0000 4 8 2.0066 -0.6743 -1.1663 5 6 1.5646 -2.0286 -1.2788 6 6 2.0765 -2.8322 -0.0805 7 6 1.5758 -2.1811 1.2124 8 1 0.4867 -2.2178 1.2411 9 8 2.1091 -2.8817 2.3380 10 6 2.0406 -0.7221 1.2497 11 1 1.6430 -0.2348 2.1399 12 6 3.5465 -0.6739 1.2793 13 1 4.1044 -0.6507 0.3548 14 6 4.2121 -0.6594 2.4867 15 7 3.5343 -0.5740 3.6103 16 14 6.0770 -0.7612 2.5263 17 1 6.6514 0.3910 1.7860 18 1 6.5173 -2.0281 1.8891 19 1 6.5447 -0.7265 3.9353 20 1 -0.3633 0.5135 0.8902 21 1 -0.3633 0.5142 -0.8898 22 1 -0.3632 -1.0277 -0.0005 23 1 3.1302 1.4423 -0.0005 24 1 1.6767 1.9564 -0.8898 25 1 1.6774 1.9562 0.8902 26 1 0.4751 -2.0552 -1.2955 27 1 1.9530 -2.4624 -2.2002 28 1 1.7038 -3.8547 -0.1416 29 1 3.1665 -2.8400 -0.0859 30 1 1.8544 -3.8136 2.3781 31 1 2.5648 -0.6050 3.5955 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259556193.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:15 Heat of formation + Delta-G solvation = -128.498339 kcal Electronic energy + Delta-G solvation = -14281.818812 eV Core-core repulsion = 11948.034075 eV Total energy + Delta-G solvation = -2333.784737 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.99622 -37.43040 -35.33205 -33.75739 -32.49642 -29.14999 -28.14385 -25.96024 -24.20137 -22.62476 -20.33083 -18.55810 -17.97272 -16.86586 -16.52723 -15.91529 -15.56711 -15.28792 -14.94719 -14.07235 -13.98331 -13.59826 -13.14227 -12.93553 -12.84199 -12.65383 -12.60336 -12.36892 -12.03638 -11.89627 -11.37136 -11.10345 -10.86882 -10.33408 -10.23387 -9.97640 -8.36493 -6.01948 1.52622 1.60888 1.78450 2.65128 3.01259 3.42638 3.64218 3.99276 4.05933 4.15141 4.28483 4.32001 4.52766 4.55612 4.63690 4.79782 4.86426 4.90357 4.95205 5.08557 5.18787 5.31894 5.37291 5.51801 5.62254 6.24301 6.42277 6.58999 6.88540 7.21675 7.75522 9.04004 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.035369 B = 0.015890 C = 0.014280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.453425 B = 1761.745298 C = 1960.336881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.121 3.879 3 C -0.117 4.117 4 O -0.390 6.390 5 C 0.063 3.937 6 C -0.168 4.168 7 C 0.105 3.895 8 H 0.038 0.962 9 O -0.564 6.564 10 C 0.009 3.991 11 H 0.010 0.990 12 C -0.566 4.566 13 H 0.033 0.967 14 C -0.019 4.019 15 N -0.933 5.933 16 Si 1.101 2.899 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.290 1.290 20 H 0.062 0.938 21 H 0.074 0.926 22 H 0.063 0.937 23 H 0.046 0.954 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.367 0.633 31 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 -2.770 -8.322 10.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.082 3.918 3 C -0.175 4.175 4 O -0.310 6.310 5 C -0.013 4.013 6 C -0.206 4.206 7 C 0.046 3.954 8 H 0.055 0.945 9 O -0.369 6.369 10 C -0.010 4.010 11 H 0.028 0.972 12 C -0.604 4.604 13 H 0.051 0.949 14 C -0.219 4.219 15 N -0.571 5.571 16 Si 0.926 3.074 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.216 1.216 20 H 0.081 0.919 21 H 0.093 0.907 22 H 0.082 0.918 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.212 0.788 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.404 -2.023 -7.324 8.782 hybrid contribution -1.595 -0.857 -0.569 1.898 sum -5.998 -2.879 -7.893 10.324 Atomic orbital electron populations 1.22436 0.95185 1.02543 1.02783 1.21499 0.92448 0.92922 0.84940 1.21519 1.01555 0.93400 1.00983 1.87844 1.74855 1.25015 1.43240 1.22585 0.98856 0.81987 0.97889 1.22699 1.01884 0.99746 0.96285 1.22142 0.93417 0.94885 0.84956 0.94467 1.86875 1.76927 1.25738 1.47320 1.19477 0.96818 0.90945 0.93739 0.97221 1.21657 0.91501 1.53818 0.93392 0.94872 1.26680 1.09401 0.93278 0.92500 1.70808 1.08899 1.48186 1.29204 0.83140 0.71650 0.77128 0.75482 1.20200 1.20710 1.21583 0.91939 0.90663 0.91795 0.93483 0.91352 0.92425 0.91775 0.87706 0.89800 0.92998 0.78796 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.62 7.93 71.98 0.57 -5.05 16 2 C 0.12 4.99 0.79 -10.76 -0.01 4.98 16 3 C -0.12 -4.74 8.57 71.98 0.62 -4.13 16 4 O -0.39 -15.91 9.75 -148.98 -1.45 -17.36 16 5 C 0.06 2.09 6.52 72.01 0.47 2.56 16 6 C -0.17 -6.23 5.51 30.68 0.17 -6.06 16 7 C 0.10 4.51 2.93 30.71 0.09 4.60 16 8 H 0.04 1.44 6.62 -2.38 -0.02 1.43 16 9 O -0.56 -26.48 11.93 -148.98 -1.78 -28.26 16 10 C 0.01 0.46 1.36 -11.45 -0.02 0.45 16 11 H 0.01 0.54 6.36 -2.39 -0.02 0.53 16 12 C -0.57 -31.86 5.38 25.60 0.14 -31.72 16 13 H 0.03 1.94 7.56 -2.91 -0.02 1.92 16 14 C -0.02 -1.13 5.03 84.66 0.43 -0.70 16 15 N -0.93 -58.65 13.34 21.45 0.29 -58.37 16 16 Si 1.10 53.47 29.91 68.60 2.05 55.52 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 19 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 20 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 21 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 22 H 0.06 1.94 4.97 -2.39 -0.01 1.93 16 23 H 0.05 2.14 7.14 -2.39 -0.02 2.13 16 24 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.06 1.80 6.34 -2.39 -0.02 1.78 16 27 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 29 H 0.05 2.30 7.39 -2.38 -0.02 2.28 16 30 H 0.37 12.90 9.09 -74.06 -0.67 12.23 16 31 H 0.26 16.48 6.22 -92.71 -0.58 15.91 16 Total: -1.00 -69.30 240.82 2.20 -67.10 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.64 Total: 16.45 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 2.46 Total: -35.08 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.29 Total: -58.37 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -3.23 Total: -45.62 kcal Atomic # 14 Polarization: 53.47 SS G_CDS: 2.05 Total: 55.52 kcal Total: -69.30 2.20 -67.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259556193.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.403 kcal (2) G-P(sol) polarization free energy of solvation -69.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds