Wall clock time and date at job start Mon Mar 30 2020 03:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47778 * 2 1 4 4 O 1.42896 * 109.48440 * 239.96477 * 2 1 3 5 5 C 1.42903 * 114.09941 * 178.85750 * 4 2 1 6 6 C 1.53099 * 109.41714 * 61.15820 * 5 4 2 7 7 C 1.53175 * 109.15640 * 302.39263 * 6 5 4 8 8 H 1.09000 * 109.54417 * 297.10756 * 7 6 5 9 9 O 1.42905 * 109.53828 * 176.84579 * 7 6 5 10 10 C 1.53096 * 109.48315 * 120.01851 * 2 1 3 11 11 H 1.08996 * 109.51842 * 57.62511 * 10 2 1 12 12 C 1.50701 * 109.52050 * 297.50402 * 10 2 1 13 13 H 1.07996 * 119.99921 * 329.90492 * 12 10 2 14 14 C 1.37875 * 120.00002 * 149.91117 * 12 10 2 15 15 N 1.31515 * 120.00229 * 354.08193 * 14 12 10 16 16 Si 1.86798 * 120.00234 * 174.07634 * 14 12 10 17 17 H 1.48497 * 109.46970 * 89.99992 * 16 14 12 18 18 H 1.48506 * 109.47040 * 330.00428 * 16 14 12 19 19 H 1.48497 * 109.47543 * 210.00446 * 16 14 12 20 20 H 1.09001 * 109.47416 * 299.97843 * 1 2 3 21 21 H 1.09004 * 109.47184 * 59.98079 * 1 2 3 22 22 H 1.09002 * 109.46574 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47092 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.46749 * 300.01968 * 3 2 1 25 25 H 1.08998 * 109.47090 * 60.02483 * 3 2 1 26 26 H 1.09000 * 109.48520 * 181.14142 * 5 4 2 27 27 H 1.08999 * 109.48366 * 301.16499 * 5 4 2 28 28 H 1.09000 * 109.51947 * 62.29464 * 6 5 4 29 29 H 1.08996 * 109.52326 * 182.48386 * 6 5 4 30 30 H 0.96704 * 113.99921 * 60.44095 * 9 7 6 31 31 H 0.97007 * 119.99572 * 5.71911 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0066 -0.6743 -1.1662 5 6 3.4307 -0.7094 -1.2789 6 6 4.0177 -1.4600 -0.0806 7 6 3.5711 -0.7706 1.2123 8 1 3.9689 0.2438 1.2408 9 8 4.0536 -1.5069 2.3379 10 6 2.0406 -0.7220 1.2497 11 1 1.6434 -1.7368 1.2718 12 6 1.5901 0.0219 2.4805 13 1 1.4488 1.0919 2.4431 14 6 1.3586 -0.6636 3.6541 15 7 1.4173 -1.9773 3.6710 16 14 0.9617 0.2737 5.2205 17 1 -0.5079 0.4572 5.3285 18 1 1.6250 1.6018 5.1842 19 1 1.4524 -0.4928 6.3939 20 1 -0.3634 0.5135 0.8902 21 1 -0.3634 0.5141 -0.8898 22 1 -0.3632 -1.0277 -0.0005 23 1 3.1302 1.4424 -0.0005 24 1 1.6765 1.9564 -0.8898 25 1 1.6772 1.9562 0.8902 26 1 3.7101 -1.2204 -2.2002 27 1 3.8193 0.3089 -1.2959 28 1 3.6614 -2.4901 -0.0860 29 1 5.1059 -1.4497 -0.1418 30 1 5.0172 -1.5778 2.3778 31 1 1.7041 -2.4601 2.8801 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259556196.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:23 Heat of formation + Delta-G solvation = -106.894680 kcal Electronic energy + Delta-G solvation = -14202.986404 eV Core-core repulsion = 11870.138472 eV Total energy + Delta-G solvation = -2332.847932 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.37317 -35.73319 -33.78184 -31.81246 -30.88434 -27.12141 -26.60697 -24.43265 -22.21882 -20.98062 -18.65345 -16.56141 -16.49658 -15.43399 -14.79436 -14.16268 -13.65816 -13.42472 -13.37602 -12.59593 -12.39357 -11.90995 -11.41523 -11.27313 -11.17295 -11.07243 -10.73650 -10.69842 -10.18314 -10.08781 -9.74446 -9.48609 -8.97427 -8.62127 -8.35843 -8.06328 -6.16804 -3.88855 3.48260 3.53293 3.67899 4.44666 4.65367 5.16967 5.42441 5.45625 5.59667 5.67812 5.86059 5.87369 5.95148 6.16242 6.20818 6.26839 6.38111 6.53261 6.62074 6.64711 6.85231 6.98326 7.02662 7.18783 7.53026 7.89308 8.37065 8.50320 8.77564 9.05582 9.87184 11.23125 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.038759 B = 0.015193 C = 0.012668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.232852 B = 1842.554812 C = 2209.744408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.121 3.879 3 C -0.167 4.167 4 O -0.390 6.390 5 C 0.069 3.931 6 C -0.193 4.193 7 C 0.107 3.893 8 H 0.037 0.963 9 O -0.534 6.534 10 C 0.024 3.976 11 H 0.046 0.954 12 C -0.597 4.597 13 H 0.050 0.950 14 C 0.035 3.965 15 N -0.896 5.896 16 Si 1.065 2.935 17 H -0.291 1.291 18 H -0.291 1.291 19 H -0.287 1.287 20 H 0.082 0.918 21 H 0.040 0.960 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.346 0.654 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 3.877 -6.648 8.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.082 3.918 3 C -0.224 4.224 4 O -0.310 6.310 5 C -0.008 4.008 6 C -0.231 4.231 7 C 0.047 3.953 8 H 0.055 0.945 9 O -0.335 6.335 10 C 0.004 3.996 11 H 0.064 0.936 12 C -0.634 4.634 13 H 0.068 0.932 14 C -0.173 4.173 15 N -0.531 5.531 16 Si 0.895 3.105 17 H -0.218 1.218 18 H -0.218 1.218 19 H -0.213 1.213 20 H 0.100 0.900 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.188 0.812 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.474 3.540 -5.062 6.654 hybrid contribution 1.524 0.350 -1.594 2.233 sum 3.998 3.890 -6.656 8.684 Atomic orbital electron populations 1.21555 0.92770 1.01906 1.01157 1.21629 0.94672 0.90773 0.84706 1.22386 1.00691 0.97660 1.01685 1.87856 1.19736 1.78147 1.45256 1.22302 0.82611 0.98689 0.97206 1.23104 0.99625 1.01882 0.98519 1.22374 0.99075 0.91624 0.82179 0.94478 1.86892 1.23028 1.76639 1.46950 1.19372 0.88730 0.98039 0.93415 0.93604 1.21661 1.51579 0.94776 0.95414 0.93168 1.25573 0.94064 0.96470 1.01173 1.70625 1.41682 1.06932 1.33855 0.83620 0.76132 0.74695 0.76048 1.21788 1.21756 1.21275 0.89958 0.94121 0.92962 0.93243 0.93983 0.90402 0.90222 0.93747 0.91196 0.92639 0.81166 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.63 37.15 0.32 -2.08 16 2 C 0.12 2.60 0.88 -90.57 -0.08 2.52 16 3 C -0.17 -3.23 7.65 37.16 0.28 -2.95 16 4 O -0.39 -8.10 10.24 -35.23 -0.36 -8.46 16 5 C 0.07 1.21 6.52 37.21 0.24 1.45 16 6 C -0.19 -3.58 5.77 -26.59 -0.15 -3.73 16 7 C 0.11 2.38 2.64 -26.55 -0.07 2.31 16 8 H 0.04 0.82 6.62 -51.93 -0.34 0.48 16 9 O -0.53 -12.58 12.02 -35.23 -0.42 -13.00 16 10 C 0.02 0.59 1.24 -91.63 -0.11 0.47 16 11 H 0.05 1.31 6.37 -51.93 -0.33 0.98 16 12 C -0.60 -16.19 6.63 -34.44 -0.23 -16.42 16 13 H 0.05 1.34 5.94 -52.49 -0.31 1.03 16 14 C 0.03 0.99 5.15 -17.82 -0.09 0.90 16 15 N -0.90 -27.40 13.34 55.43 0.74 -26.67 16 16 Si 1.07 25.54 29.91 -169.99 -5.08 20.46 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H 0.08 1.74 7.30 -51.93 -0.38 1.37 16 21 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.05 0.92 4.98 -51.93 -0.26 0.66 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 1.57 6.18 -51.93 -0.32 1.25 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.04 0.73 6.34 -51.93 -0.33 0.40 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.35 6.24 9.09 45.56 0.41 6.65 16 31 H 0.28 8.61 6.06 -40.82 -0.25 8.36 16 LS Contribution 239.66 15.07 3.61 3.61 Total: -1.00 -31.26 239.66 -4.85 -36.11 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -3.44 Total: 5.48 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 0.11 Total: -17.53 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.74 Total: -26.67 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.78 Total: -21.46 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.46 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.26 -4.85 -36.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259556196.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.788 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds