Wall clock time and date at job start Mon Mar 30 2020 02:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00529 * 2 1 4 4 H 1.48504 * 109.47168 * 240.00163 * 3 2 1 5 5 H 1.48503 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47461 * 120.00254 * 3 2 1 7 7 C 1.37878 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00709 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47026 * 180.02562 * 9 7 2 11 11 H 1.09008 * 109.78627 * 305.70962 * 10 9 7 12 12 S 1.81924 * 109.75255 * 66.42119 * 10 9 7 13 13 C 1.81398 * 101.99204 * 168.37683 * 12 10 9 14 14 C 1.52938 * 109.31099 * 303.34028 * 13 12 10 15 15 C 1.52646 * 110.19873 * 66.30840 * 14 13 12 16 16 C 1.50728 * 110.25757 * 295.46952 * 15 14 13 17 17 O 1.20761 * 120.44017 * 241.97344 * 16 15 14 18 18 H 0.97003 * 119.99270 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47105 * 59.99859 * 9 7 2 20 20 H 1.09002 * 109.46835 * 300.00178 * 9 7 2 21 21 H 1.09001 * 109.29517 * 183.47728 * 13 12 10 22 22 H 1.08999 * 109.58497 * 63.38150 * 13 12 10 23 23 H 1.09002 * 109.32549 * 306.13082 * 14 13 12 24 24 H 1.09005 * 109.32176 * 186.48942 * 14 13 12 25 25 H 1.09008 * 109.34044 * 55.71641 * 15 14 13 26 26 H 1.09004 * 109.34000 * 175.38692 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1943 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0018 11 1 2.9405 -3.5540 -0.8306 12 16 3.1638 -3.6838 1.5718 13 6 3.9898 -5.2973 1.5029 14 6 2.9403 -6.3955 1.3247 15 6 2.2688 -6.2662 -0.0400 16 6 1.4987 -4.9731 -0.1223 17 8 0.3021 -4.9828 -0.2848 18 1 -0.4849 0.8401 0.0004 19 1 0.6245 -2.5571 -0.8897 20 1 0.6238 -2.5567 0.8903 21 1 4.5357 -5.4625 2.4318 22 1 4.6839 -5.3169 0.6628 23 1 2.1871 -6.3051 2.1073 24 1 3.4223 -7.3704 1.3987 25 1 3.0300 -6.2834 -0.8201 26 1 1.5838 -7.1015 -0.1859 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259581534.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:24 Heat of formation + Delta-G solvation = -55.229420 kcal Electronic energy + Delta-G solvation = -10888.828255 eV Core-core repulsion = 8865.140474 eV Total energy + Delta-G solvation = -2023.687782 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.061 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.18593 -34.87267 -33.58289 -31.04330 -27.99574 -25.89264 -22.89800 -20.97777 -19.15376 -16.72895 -16.33251 -15.21153 -14.95787 -14.46950 -14.40655 -13.84946 -13.53931 -12.74850 -12.26800 -12.00470 -11.56754 -11.20956 -11.07841 -10.83203 -10.65685 -10.23609 -10.00333 -9.53190 -9.24721 -8.80218 -8.34940 -7.09932 -5.99051 -4.02411 1.95450 2.43326 3.23882 3.36360 3.40159 3.43137 4.28066 4.50739 4.74312 4.85452 5.19924 5.37528 5.39591 5.52288 5.64985 5.72183 5.85395 6.00936 6.08513 6.52597 7.58403 7.64551 7.85199 7.97336 8.32966 9.02199 9.61039 11.12034 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.052095 B = 0.010708 C = 0.009293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.353737 B = 2614.266962 C = 3012.204363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.048 3.952 10 C -0.092 4.092 11 H 0.107 0.893 12 S -0.196 6.196 13 C -0.118 4.118 14 C -0.108 4.108 15 C -0.176 4.176 16 C 0.357 3.643 17 O -0.437 6.437 18 H 0.262 0.738 19 H 0.039 0.961 20 H 0.031 0.969 21 H 0.103 0.897 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.681 -11.250 1.241 13.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.081 0.919 9 C 0.010 3.990 10 C -0.220 4.220 11 H 0.125 0.875 12 S 0.032 5.968 13 C -0.267 4.267 14 C -0.147 4.147 15 C -0.214 4.214 16 C 0.227 3.773 17 O -0.308 6.308 18 H 0.072 0.928 19 H 0.057 0.943 20 H 0.050 0.950 21 H 0.122 0.878 22 H 0.100 0.900 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.111 0.889 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.949 -10.339 1.977 12.613 hybrid contribution 0.559 0.010 -0.977 1.126 sum 7.508 -10.328 1.001 12.808 Atomic orbital electron populations 1.69974 1.06099 1.26864 1.50116 1.24993 0.94812 0.99294 0.95115 0.86604 0.79532 0.82883 0.78706 1.20222 1.21330 1.20044 1.21133 0.93210 0.90315 1.51380 0.91898 1.18927 0.92227 0.88701 0.99123 1.24229 1.01943 0.98752 0.97114 0.87549 1.87590 1.59621 1.20897 1.28712 1.23548 1.00399 0.96958 1.05760 1.21616 0.97929 0.98823 0.96379 1.22225 1.01619 0.97998 0.99572 1.24923 0.89637 0.91825 0.70882 1.90386 1.16716 1.89495 1.34241 0.92827 0.94331 0.95031 0.87835 0.89989 0.90436 0.90560 0.88888 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.29 13.29 55.43 0.74 -26.55 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 15 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 15 7 C -0.52 -14.75 8.58 -34.44 -0.30 -15.04 15 8 H 0.06 1.72 7.67 -52.49 -0.40 1.32 15 9 C 0.05 1.28 3.88 -27.88 -0.11 1.17 15 10 C -0.09 -1.91 2.80 -27.56 -0.08 -1.98 15 11 H 0.11 2.07 8.14 -51.92 -0.42 1.64 15 12 S -0.20 -3.70 21.15 -107.50 -2.27 -5.98 15 13 C -0.12 -1.50 6.36 37.13 0.24 -1.26 15 14 C -0.11 -1.26 5.74 -26.94 -0.15 -1.41 15 15 C -0.18 -2.30 5.86 -28.05 -0.16 -2.47 15 16 C 0.36 6.67 6.41 -28.70 -0.18 6.49 15 17 O -0.44 -9.75 16.72 6.00 0.10 -9.65 15 18 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 19 H 0.04 1.11 7.93 -51.93 -0.41 0.70 15 20 H 0.03 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.10 1.13 8.14 -51.92 -0.42 0.70 15 22 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.08 0.99 8.14 -51.93 -0.42 0.56 15 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 25 H 0.09 1.02 8.14 -51.92 -0.42 0.60 15 26 H 0.09 1.07 8.12 -51.93 -0.42 0.65 15 LS Contribution 236.13 15.07 3.56 3.56 Total: -1.00 -31.89 236.13 -7.07 -38.96 By element: Atomic # 1 Polarization: -1.03 SS G_CDS: -3.33 Total: -4.36 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -0.85 Total: -12.87 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.74 Total: -26.55 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.10 Total: -9.65 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -2.27 Total: -5.98 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.89 -7.07 -38.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259581534.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.269 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds