Wall clock time and date at job start Mon Mar 30 2020 02:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00529 * 2 1 4 4 H 1.48504 * 109.47168 * 240.00163 * 3 2 1 5 5 H 1.48503 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47461 * 120.00254 * 3 2 1 7 7 C 1.37878 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00709 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47026 * 180.02562 * 9 7 2 11 11 H 1.09008 * 109.78627 * 305.70962 * 10 9 7 12 12 S 1.81924 * 109.75255 * 66.42119 * 10 9 7 13 13 C 1.81398 * 101.99204 * 168.37683 * 12 10 9 14 14 C 1.52938 * 109.31099 * 303.34028 * 13 12 10 15 15 C 1.52646 * 110.19873 * 66.30840 * 14 13 12 16 16 C 1.50728 * 110.25757 * 295.46952 * 15 14 13 17 17 O 1.20761 * 120.44017 * 241.97344 * 16 15 14 18 18 H 0.97003 * 119.99270 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47105 * 59.99859 * 9 7 2 20 20 H 1.09002 * 109.46835 * 300.00178 * 9 7 2 21 21 H 1.09001 * 109.29517 * 183.47728 * 13 12 10 22 22 H 1.08999 * 109.58497 * 63.38150 * 13 12 10 23 23 H 1.09002 * 109.32549 * 306.13082 * 14 13 12 24 24 H 1.09005 * 109.32176 * 186.48942 * 14 13 12 25 25 H 1.09008 * 109.34044 * 55.71641 * 15 14 13 26 26 H 1.09004 * 109.34000 * 175.38692 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1943 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0018 11 1 2.9405 -3.5540 -0.8306 12 16 3.1638 -3.6838 1.5718 13 6 3.9898 -5.2973 1.5029 14 6 2.9403 -6.3955 1.3247 15 6 2.2688 -6.2662 -0.0400 16 6 1.4987 -4.9731 -0.1223 17 8 0.3021 -4.9828 -0.2848 18 1 -0.4849 0.8401 0.0004 19 1 0.6245 -2.5571 -0.8897 20 1 0.6238 -2.5567 0.8903 21 1 4.5357 -5.4625 2.4318 22 1 4.6839 -5.3169 0.6628 23 1 2.1871 -6.3051 2.1073 24 1 3.4223 -7.3704 1.3987 25 1 3.0300 -6.2834 -0.8201 26 1 1.5838 -7.1015 -0.1859 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259581534.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:23 Heat of formation + Delta-G solvation = -76.119364 kcal Electronic energy + Delta-G solvation = -10889.734111 eV Core-core repulsion = 8865.140474 eV Total energy + Delta-G solvation = -2024.593638 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.061 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.71816 -36.00740 -35.67029 -33.02712 -29.23509 -27.75285 -24.55581 -22.46852 -20.64549 -18.62245 -17.94589 -16.74503 -16.58553 -16.23924 -15.85973 -15.20578 -14.90289 -14.26631 -13.95990 -13.51106 -13.17331 -12.89285 -12.61245 -12.44103 -12.20274 -11.88794 -11.79061 -11.41341 -11.11774 -10.58834 -10.26091 -8.58397 -8.21683 -6.33711 0.46156 1.11264 1.39326 1.43969 1.51519 1.83575 2.39501 2.96423 3.12421 3.74369 3.88062 4.00065 4.13662 4.43767 4.51227 4.61217 4.80903 4.91817 5.04035 5.17494 5.31643 5.39761 5.73273 6.08583 6.43127 6.80154 7.35111 8.90719 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.052095 B = 0.010708 C = 0.009293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.353737 B = 2614.266962 C = 3012.204363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.072 0.928 9 C 0.058 3.942 10 C -0.093 4.093 11 H 0.120 0.880 12 S -0.260 6.260 13 C -0.094 4.094 14 C -0.105 4.105 15 C -0.163 4.163 16 C 0.357 3.643 17 O -0.488 6.488 18 H 0.264 0.736 19 H -0.001 1.001 20 H -0.012 1.012 21 H 0.131 0.869 22 H 0.107 0.893 23 H 0.062 0.938 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.598 -12.826 1.371 16.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.569 4.569 8 H 0.090 0.910 9 C 0.020 3.980 10 C -0.221 4.221 11 H 0.138 0.862 12 S -0.033 6.033 13 C -0.242 4.242 14 C -0.143 4.143 15 C -0.201 4.201 16 C 0.231 3.769 17 O -0.363 6.363 18 H 0.072 0.928 19 H 0.017 0.983 20 H 0.006 0.994 21 H 0.149 0.851 22 H 0.126 0.874 23 H 0.081 0.919 24 H 0.145 0.855 25 H 0.145 0.855 26 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.894 -11.928 2.104 15.640 hybrid contribution -0.310 0.415 -0.977 1.106 sum 9.584 -11.513 1.127 15.022 Atomic orbital electron populations 1.70141 1.08117 1.27926 1.51493 1.26042 0.95698 1.03676 0.94592 0.85419 0.78163 0.77599 0.79403 1.18628 1.21015 1.19112 1.21506 0.93690 0.91132 1.50610 0.91026 1.18581 0.92721 0.91541 0.95171 1.23990 1.01251 0.98068 0.98827 0.86243 1.87642 1.60329 1.27644 1.27678 1.23722 1.00224 0.91900 1.08320 1.21662 0.97357 1.00727 0.94586 1.22238 1.01985 0.94062 1.01778 1.25559 0.89132 0.93376 0.68844 1.90376 1.18928 1.90171 1.36839 0.92767 0.98312 0.99407 0.85094 0.87410 0.91938 0.85452 0.85504 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.79 13.29 21.45 0.28 -59.51 15 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 15 3 Si 0.97 45.54 29.54 68.60 2.03 47.57 15 4 H -0.26 -11.57 7.11 99.48 0.71 -10.87 15 5 H -0.28 -13.11 7.11 99.48 0.71 -12.41 15 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 15 7 C -0.53 -30.97 8.58 25.60 0.22 -30.75 15 8 H 0.07 3.95 7.67 -2.91 -0.02 3.93 15 9 C 0.06 3.26 3.88 29.85 0.12 3.37 15 10 C -0.09 -3.91 2.80 30.05 0.08 -3.83 15 11 H 0.12 4.60 8.14 -2.38 -0.02 4.58 15 12 S -0.26 -9.61 21.15 -56.49 -1.19 -10.80 15 13 C -0.09 -1.94 6.36 71.96 0.46 -1.49 15 14 C -0.10 -1.91 5.74 30.46 0.17 -1.73 15 15 C -0.16 -3.64 5.86 29.74 0.17 -3.47 15 16 C 0.36 13.29 6.41 29.32 0.19 13.48 15 17 O -0.49 -22.70 16.72 -1.45 -0.02 -22.72 15 18 H 0.26 15.80 8.31 -92.71 -0.77 15.03 15 19 H 0.00 -0.08 7.93 -2.39 -0.02 -0.10 15 20 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 15 21 H 0.13 2.12 8.14 -2.39 -0.02 2.10 15 22 H 0.11 1.80 8.14 -2.39 -0.02 1.78 15 23 H 0.06 1.38 8.14 -2.39 -0.02 1.36 15 24 H 0.13 1.26 8.14 -2.38 -0.02 1.24 15 25 H 0.13 2.07 8.14 -2.38 -0.02 2.05 15 26 H 0.10 2.11 8.12 -2.38 -0.02 2.09 15 Total: -1.00 -75.05 236.13 4.12 -70.93 By element: Atomic # 1 Polarization: -2.52 SS G_CDS: 1.15 Total: -1.36 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 1.88 Total: -24.09 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.28 Total: -59.51 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.02 Total: -22.72 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: -9.61 SS G_CDS: -1.19 Total: -10.80 kcal Total: -75.05 4.12 -70.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259581534.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.194 kcal (2) G-P(sol) polarization free energy of solvation -75.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds