Wall clock time and date at job start Mon Mar 30 2020 02:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.74692 * 55.00170 * 10 9 7 12 12 S 1.81929 * 109.74844 * 294.31415 * 10 9 7 13 13 C 1.81729 * 102.07915 * 191.64261 * 12 10 9 14 14 C 1.52941 * 109.14563 * 56.52456 * 13 12 10 15 15 C 1.52647 * 110.34023 * 293.78337 * 14 13 12 16 16 C 1.50745 * 110.30092 * 64.59133 * 15 14 13 17 17 O 1.20762 * 120.43856 * 118.08957 * 16 15 14 18 18 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 20 20 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 21 21 H 1.09000 * 109.52914 * 176.42635 * 13 12 10 22 22 H 1.09005 * 109.52671 * 296.55984 * 13 12 10 23 23 H 1.09002 * 109.32365 * 54.04752 * 14 13 12 24 24 H 1.08995 * 109.32954 * 173.51454 * 14 13 12 25 25 H 1.09001 * 109.33824 * 184.86007 * 15 14 13 26 26 H 1.09003 * 109.33602 * 304.53152 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9319 -3.5596 0.8398 12 16 3.1807 -3.6711 -1.5609 13 6 4.0084 -5.2878 -1.4988 14 6 2.9549 -6.3847 -1.3378 15 6 2.2690 -6.2664 0.0208 16 6 1.4981 -4.9738 0.1066 17 8 0.3000 -4.9849 0.2579 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5568 -0.8903 20 1 0.6247 -2.5571 0.8897 21 1 4.5635 -5.4487 -2.4230 22 1 4.6948 -5.3134 -0.6524 23 1 2.2099 -6.2882 -2.1276 24 1 3.4349 -7.3602 -1.4157 25 1 1.5848 -7.1043 0.1540 26 1 3.0223 -6.2868 0.8084 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259581538.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:27 Heat of formation + Delta-G solvation = -76.143264 kcal Electronic energy + Delta-G solvation = -10889.533714 eV Core-core repulsion = 8864.939040 eV Total energy + Delta-G solvation = -2024.594674 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.061 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.71571 -35.99898 -35.67300 -33.02886 -29.23424 -27.75306 -24.55281 -22.46884 -20.64407 -18.62979 -17.93875 -16.74303 -16.59224 -16.23430 -15.84940 -15.20619 -14.90410 -14.28080 -13.95928 -13.51379 -13.16757 -12.92580 -12.58460 -12.45218 -12.19805 -11.89553 -11.78943 -11.37503 -11.11799 -10.60596 -10.25680 -8.58185 -8.22201 -6.33988 0.46035 1.10973 1.39161 1.40590 1.54365 1.83787 2.39149 2.96282 3.12119 3.74639 3.88051 4.00035 4.13694 4.43780 4.51218 4.61277 4.81085 4.91891 5.03969 5.17756 5.31481 5.39824 5.73445 6.08431 6.43132 6.80475 7.34957 8.90654 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.052041 B = 0.010723 C = 0.009295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.911525 B = 2610.696575 C = 3011.499762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.970 3.030 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.072 0.928 9 C 0.057 3.943 10 C -0.092 4.092 11 H 0.120 0.880 12 S -0.262 6.262 13 C -0.092 4.092 14 C -0.105 4.105 15 C -0.163 4.163 16 C 0.357 3.643 17 O -0.488 6.488 18 H 0.264 0.736 19 H -0.012 1.012 20 H -0.001 1.001 21 H 0.131 0.869 22 H 0.107 0.893 23 H 0.062 0.938 24 H 0.127 0.873 25 H 0.105 0.895 26 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.637 -12.855 -1.372 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.794 3.206 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.090 0.910 9 C 0.019 3.981 10 C -0.221 4.221 11 H 0.137 0.863 12 S -0.035 6.035 13 C -0.240 4.240 14 C -0.144 4.144 15 C -0.200 4.200 16 C 0.231 3.769 17 O -0.363 6.363 18 H 0.072 0.928 19 H 0.006 0.994 20 H 0.017 0.983 21 H 0.149 0.851 22 H 0.126 0.874 23 H 0.081 0.919 24 H 0.145 0.855 25 H 0.124 0.876 26 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.948 -11.955 -2.104 15.694 hybrid contribution -0.348 0.421 0.972 1.115 sum 9.600 -11.534 -1.131 15.049 Atomic orbital electron populations 1.70150 1.08117 1.27804 1.51676 1.26044 0.95695 1.03684 0.94638 0.85315 0.79276 0.78318 0.77671 1.17994 1.20627 1.20267 1.21565 0.93715 0.91096 1.50302 0.90987 1.18592 0.92727 0.91574 0.95187 1.23980 1.01133 0.98051 0.98917 0.86253 1.87674 1.59602 1.27577 1.28618 1.23760 1.00139 0.91764 1.08334 1.21654 0.97261 1.00765 0.94687 1.22235 1.01909 0.94087 1.01814 1.25564 0.89170 0.93370 0.68809 1.90376 1.18885 1.90176 1.36879 0.92771 0.99390 0.98303 0.85060 0.87428 0.91948 0.85474 0.87619 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.82 13.29 21.45 0.28 -59.53 15 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 15 3 Si 0.97 45.60 29.54 68.60 2.03 47.62 15 4 H -0.26 -11.33 7.11 99.48 0.71 -10.63 15 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 15 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 15 7 C -0.53 -30.80 8.56 25.60 0.22 -30.58 15 8 H 0.07 3.99 7.64 -2.91 -0.02 3.97 15 9 C 0.06 3.22 3.88 29.85 0.12 3.33 15 10 C -0.09 -3.89 2.81 30.05 0.08 -3.80 15 11 H 0.12 4.60 8.14 -2.39 -0.02 4.58 15 12 S -0.26 -9.67 21.11 -56.49 -1.19 -10.86 15 13 C -0.09 -1.90 6.39 71.96 0.46 -1.44 15 14 C -0.10 -1.91 5.72 30.46 0.17 -1.74 15 15 C -0.16 -3.63 5.86 29.74 0.17 -3.46 15 16 C 0.36 13.28 6.42 29.32 0.19 13.47 15 17 O -0.49 -22.69 16.74 -1.45 -0.02 -22.71 15 18 H 0.26 15.71 8.31 -92.71 -0.77 14.94 15 19 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 15 20 H 0.00 -0.07 7.95 -2.39 -0.02 -0.09 15 21 H 0.13 2.12 8.14 -2.39 -0.02 2.10 15 22 H 0.11 1.79 8.14 -2.39 -0.02 1.77 15 23 H 0.06 1.38 8.14 -2.39 -0.02 1.36 15 24 H 0.13 1.25 8.14 -2.39 -0.02 1.24 15 25 H 0.11 2.11 8.12 -2.39 -0.02 2.09 15 26 H 0.13 2.07 8.14 -2.39 -0.02 2.05 15 Total: -1.00 -75.15 236.11 4.13 -71.02 By element: Atomic # 1 Polarization: -2.74 SS G_CDS: 1.15 Total: -1.59 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 1.88 Total: -23.95 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.28 Total: -59.53 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.02 Total: -22.71 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: -9.67 SS G_CDS: -1.19 Total: -10.86 kcal Total: -75.15 4.13 -71.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259581538.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.123 kcal (2) G-P(sol) polarization free energy of solvation -75.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds