Wall clock time and date at job start Mon Mar 30 2020 02:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00214 * 2 1 4 4 H 1.48498 * 109.47293 * 270.00229 * 3 2 1 5 5 H 1.48507 * 109.47223 * 29.99850 * 3 2 1 6 6 H 1.48495 * 109.47391 * 149.99604 * 3 2 1 7 7 C 1.37878 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00246 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99814 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47082 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.21090 * 305.39481 * 10 9 7 12 12 C 1.53213 * 109.33842 * 185.79311 * 10 9 7 13 13 C 1.54966 * 116.93057 * 197.52313 * 12 10 9 14 14 C 1.50363 * 116.53467 * 313.81784 * 13 12 10 15 15 S 1.84949 * 109.17115 * 90.84623 * 14 13 12 16 16 C 1.74439 * 101.83361 * 291.98906 * 15 14 13 17 17 C 1.49719 * 109.34137 * 65.00011 * 10 9 7 18 18 H 0.97004 * 119.99792 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47637 * 59.99818 * 9 7 2 20 20 H 1.09004 * 109.47504 * 299.99895 * 9 7 2 21 21 H 1.09008 * 107.95579 * 75.64991 * 12 10 9 22 22 H 1.08997 * 107.92908 * 319.38837 * 12 10 9 23 23 H 1.09004 * 108.04270 * 192.03390 * 13 12 10 24 24 H 1.09001 * 108.00912 * 75.57093 * 13 12 10 25 25 H 1.08997 * 109.52331 * 330.93542 * 14 13 12 26 26 H 1.09003 * 109.52135 * 210.75144 * 14 13 12 27 27 H 1.09001 * 108.41917 * 300.72346 * 16 15 14 28 28 H 1.09002 * 108.41992 * 183.48419 * 16 15 14 29 29 H 1.09001 * 110.37215 * 100.93330 * 17 10 9 30 30 H 1.09002 * 110.37033 * 338.54316 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 1 3.5786 -3.1736 0.8397 12 6 5.5466 -2.6356 0.1475 13 6 6.2901 -3.9377 -0.2436 14 6 5.7123 -5.2239 0.2786 15 16 4.5064 -5.8926 -0.9540 16 6 3.2224 -4.7146 -0.8738 17 6 3.6244 -3.3028 -1.2796 18 1 -0.4850 0.8401 -0.0004 19 1 3.8746 -0.6800 0.8911 20 1 3.8753 -0.6805 -0.8889 21 1 5.7841 -2.4125 1.1877 22 1 5.9420 -1.8257 -0.4655 23 1 7.3174 -3.8600 0.1127 24 1 6.3167 -3.9969 -1.3316 25 1 5.2016 -5.0368 1.2232 26 1 6.5133 -5.9467 0.4336 27 1 2.8457 -4.6849 0.1486 28 1 2.4126 -5.0428 -1.5254 29 1 4.4677 -3.3319 -1.9696 30 1 2.7798 -2.7829 -1.7318 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259613920.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:55 Heat of formation + Delta-G solvation = -25.256725 kcal Electronic energy + Delta-G solvation = -11321.960936 eV Core-core repulsion = 9435.405962 eV Total energy + Delta-G solvation = -1886.554974 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.64330 -33.27214 -32.18123 -30.23140 -27.42236 -24.30491 -22.69086 -21.04587 -18.76283 -16.96127 -16.43403 -14.85519 -14.30031 -14.03188 -13.88351 -13.66859 -13.08839 -12.55261 -12.35617 -11.78449 -11.72204 -11.23003 -11.15875 -10.61389 -10.45399 -10.07814 -9.81414 -9.72914 -9.61506 -9.23822 -9.05861 -8.55474 -7.40047 -6.06059 -4.03553 2.08874 2.86176 3.28733 3.36608 3.39918 4.43468 4.88506 5.11467 5.27167 5.27602 5.32429 5.47206 5.70174 5.73400 5.82561 6.01340 6.16507 6.23184 6.34153 6.49505 6.59651 6.73488 6.87982 7.07287 7.27610 7.42480 7.77729 8.52274 8.98992 9.56857 11.07166 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.055781 B = 0.009598 C = 0.008524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.841341 B = 2916.436388 C = 3284.174802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.077 4.077 11 H 0.061 0.939 12 C -0.118 4.118 13 C -0.121 4.121 14 C -0.065 4.065 15 S -0.263 6.263 16 C -0.109 4.109 17 C -0.106 4.106 18 H 0.262 0.738 19 H 0.013 0.987 20 H 0.012 0.988 21 H 0.049 0.951 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.098 -7.395 -0.445 13.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.091 0.909 9 C -0.046 4.046 10 C -0.095 4.095 11 H 0.080 0.920 12 C -0.156 4.156 13 C -0.160 4.160 14 C -0.213 4.213 15 S -0.037 6.037 16 C -0.258 4.258 17 C -0.145 4.145 18 H 0.072 0.928 19 H 0.032 0.968 20 H 0.030 0.970 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.983 -8.200 -1.064 13.748 hybrid contribution 0.106 2.087 0.792 2.235 sum 11.090 -6.113 -0.272 12.666 Atomic orbital electron populations 1.69916 1.06269 1.26832 1.51217 1.25028 0.94700 0.99112 0.94673 0.86807 0.80356 0.83806 0.78477 1.20338 1.21457 1.19110 1.21120 0.89375 0.94368 1.50554 0.90860 1.19692 0.97156 0.91578 0.96170 1.20789 0.92331 0.99506 0.96923 0.92031 1.22054 0.96664 0.95845 1.00987 1.21630 0.99017 0.93305 1.02020 1.23270 0.99287 0.99519 0.99188 1.85933 1.22519 1.37808 1.57409 1.22743 0.98645 0.98551 1.05814 1.21295 1.02363 0.92616 0.98216 0.92779 0.96831 0.96980 0.93195 0.92292 0.92009 0.91191 0.89870 0.88551 0.89932 0.88802 0.91641 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.27 8.54 -34.44 -0.29 -14.56 16 8 H 0.07 2.17 7.77 -52.49 -0.41 1.76 16 9 C -0.01 -0.20 3.30 -27.88 -0.09 -0.29 16 10 C -0.08 -1.46 1.90 -92.13 -0.17 -1.64 16 11 H 0.06 1.22 6.70 -51.93 -0.35 0.87 16 12 C -0.12 -1.84 5.00 -25.58 -0.13 -1.97 16 13 C -0.12 -1.57 5.05 -27.01 -0.14 -1.71 16 14 C -0.07 -0.83 6.23 35.84 0.22 -0.60 16 15 S -0.26 -3.91 21.72 -107.50 -2.34 -6.24 16 16 C -0.11 -1.81 5.44 36.80 0.20 -1.61 16 17 C -0.11 -1.91 5.05 -28.71 -0.15 -2.06 16 18 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 19 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 20 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 21 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 22 H 0.06 0.93 7.93 -51.93 -0.41 0.51 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.95 6.82 -51.93 -0.35 0.59 16 25 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 26 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.08 1.44 6.79 -48.46 -0.33 1.11 16 28 H 0.09 1.53 8.14 -48.46 -0.39 1.14 16 29 H 0.06 1.11 6.50 -51.93 -0.34 0.77 16 30 H 0.09 1.98 6.77 -51.93 -0.35 1.63 16 LS Contribution 242.85 15.07 3.66 3.66 Total: -1.00 -29.03 242.85 -7.77 -36.80 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.55 Total: -1.69 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -0.64 Total: -22.64 kcal Atomic # 7 Polarization: -27.61 SS G_CDS: 0.77 Total: -26.84 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Atomic # 16 Polarization: -3.91 SS G_CDS: -2.34 Total: -6.24 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.03 -7.77 -36.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259613920.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.542 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds