Wall clock time and date at job start Mon Mar 30 2020 02:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00214 * 2 1 4 4 H 1.48498 * 109.47293 * 270.00229 * 3 2 1 5 5 H 1.48507 * 109.47223 * 29.99850 * 3 2 1 6 6 H 1.48495 * 109.47391 * 149.99604 * 3 2 1 7 7 C 1.37878 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00246 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99814 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47082 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.21090 * 305.39481 * 10 9 7 12 12 C 1.53213 * 109.33842 * 185.79311 * 10 9 7 13 13 C 1.54966 * 116.93057 * 197.52313 * 12 10 9 14 14 C 1.50363 * 116.53467 * 313.81784 * 13 12 10 15 15 S 1.84949 * 109.17115 * 90.84623 * 14 13 12 16 16 C 1.74439 * 101.83361 * 291.98906 * 15 14 13 17 17 C 1.49719 * 109.34137 * 65.00011 * 10 9 7 18 18 H 0.97004 * 119.99792 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47637 * 59.99818 * 9 7 2 20 20 H 1.09004 * 109.47504 * 299.99895 * 9 7 2 21 21 H 1.09008 * 107.95579 * 75.64991 * 12 10 9 22 22 H 1.08997 * 107.92908 * 319.38837 * 12 10 9 23 23 H 1.09004 * 108.04270 * 192.03390 * 13 12 10 24 24 H 1.09001 * 108.00912 * 75.57093 * 13 12 10 25 25 H 1.08997 * 109.52331 * 330.93542 * 14 13 12 26 26 H 1.09003 * 109.52135 * 210.75144 * 14 13 12 27 27 H 1.09001 * 108.41917 * 300.72346 * 16 15 14 28 28 H 1.09002 * 108.41992 * 183.48419 * 16 15 14 29 29 H 1.09001 * 110.37215 * 100.93330 * 17 10 9 30 30 H 1.09002 * 110.37033 * 338.54316 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 1 3.5786 -3.1736 0.8397 12 6 5.5466 -2.6356 0.1475 13 6 6.2901 -3.9377 -0.2436 14 6 5.7123 -5.2239 0.2786 15 16 4.5064 -5.8926 -0.9540 16 6 3.2224 -4.7146 -0.8738 17 6 3.6244 -3.3028 -1.2796 18 1 -0.4850 0.8401 -0.0004 19 1 3.8746 -0.6800 0.8911 20 1 3.8753 -0.6805 -0.8889 21 1 5.7841 -2.4125 1.1877 22 1 5.9420 -1.8257 -0.4655 23 1 7.3174 -3.8600 0.1127 24 1 6.3167 -3.9969 -1.3316 25 1 5.2016 -5.0368 1.2232 26 1 6.5133 -5.9467 0.4336 27 1 2.8457 -4.6849 0.1486 28 1 2.4126 -5.0428 -1.5254 29 1 4.4677 -3.3319 -1.9696 30 1 2.7798 -2.7829 -1.7318 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259613920.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:55 Heat of formation + Delta-G solvation = -41.743766 kcal Electronic energy + Delta-G solvation = -11322.675867 eV Core-core repulsion = 9435.405962 eV Total energy + Delta-G solvation = -1887.269905 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.10195 -35.03698 -33.74653 -31.89883 -29.00111 -25.82417 -24.19059 -22.67393 -20.21211 -18.89317 -17.82010 -16.56509 -15.75814 -15.48808 -15.19652 -15.18177 -14.63817 -14.20084 -13.80595 -13.37800 -13.20764 -12.88986 -12.64388 -12.23054 -12.01009 -11.67691 -11.53901 -11.23121 -11.08810 -10.96182 -10.75359 -10.55824 -8.59634 -8.28046 -6.30314 0.95308 1.34347 1.35906 1.47427 1.63905 2.35764 3.07425 3.76813 3.81792 3.96496 4.14187 4.20786 4.37060 4.56782 4.64357 4.79166 4.84073 4.91122 5.07716 5.12366 5.19227 5.23554 5.34810 5.39184 5.57082 5.72153 5.72879 6.31465 6.77254 7.33405 8.88550 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.055781 B = 0.009598 C = 0.008524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.841341 B = 2916.436388 C = 3284.174802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.247 1.247 7 C -0.518 4.518 8 H 0.035 0.965 9 C -0.006 4.006 10 C -0.073 4.073 11 H 0.047 0.953 12 C -0.115 4.115 13 C -0.115 4.115 14 C -0.061 4.061 15 S -0.263 6.263 16 C -0.106 4.106 17 C -0.098 4.098 18 H 0.264 0.736 19 H 0.015 0.985 20 H 0.017 0.983 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.094 0.906 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.128 0.872 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.101 -7.367 -0.271 15.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.171 1.171 7 C -0.556 4.556 8 H 0.053 0.947 9 C -0.044 4.044 10 C -0.091 4.091 11 H 0.065 0.935 12 C -0.152 4.152 13 C -0.154 4.154 14 C -0.208 4.208 15 S -0.037 6.037 16 C -0.255 4.255 17 C -0.138 4.138 18 H 0.073 0.927 19 H 0.033 0.967 20 H 0.035 0.965 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.113 0.887 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.146 0.854 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.004 -8.189 -0.890 16.247 hybrid contribution -0.864 1.986 0.754 2.293 sum 13.141 -6.203 -0.135 14.532 Atomic orbital electron populations 1.70075 1.08247 1.27923 1.53170 1.25994 0.95555 1.03395 0.94552 0.85705 0.79519 0.78631 0.79070 1.19334 1.21260 1.17084 1.21436 0.91920 0.92909 1.49336 0.94688 1.19653 0.93976 0.94606 0.96148 1.20680 0.95271 0.96492 0.96682 0.93463 1.21981 0.93571 0.97924 1.01769 1.21575 1.00113 0.91718 1.01998 1.23424 0.99168 1.00211 0.98001 1.85914 1.22318 1.36964 1.58457 1.22549 0.99835 0.98395 1.04679 1.21161 1.01453 0.93141 0.98030 0.92705 0.96715 0.96468 0.92389 0.91919 0.88724 0.91343 0.90079 0.85414 0.91434 0.89374 0.89988 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 2 C 0.00 0.07 5.47 84.65 0.46 0.54 16 3 Si 0.95 44.44 27.47 68.60 1.88 46.33 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 7 C -0.52 -29.46 8.54 25.60 0.22 -29.24 16 8 H 0.03 2.19 7.77 -2.91 -0.02 2.17 16 9 C -0.01 -0.30 3.30 29.85 0.10 -0.20 16 10 C -0.07 -2.71 1.90 -11.77 -0.02 -2.74 16 11 H 0.05 1.88 6.70 -2.39 -0.02 1.87 16 12 C -0.11 -3.25 5.00 31.34 0.16 -3.10 16 13 C -0.12 -2.52 5.05 30.41 0.15 -2.37 16 14 C -0.06 -1.33 6.23 71.13 0.44 -0.88 16 15 S -0.26 -7.32 21.72 -56.49 -1.23 -8.55 16 16 C -0.11 -3.54 5.44 71.75 0.39 -3.15 16 17 C -0.10 -3.58 5.05 29.31 0.15 -3.43 16 18 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 19 H 0.01 0.67 7.20 -2.38 -0.02 0.65 16 20 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 21 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 22 H 0.06 1.75 7.93 -2.39 -0.02 1.73 16 23 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.07 1.57 6.82 -2.39 -0.02 1.55 16 25 H 0.08 1.86 8.05 -2.39 -0.02 1.84 16 26 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.07 2.42 6.79 -4.59 -0.03 2.39 16 28 H 0.09 2.98 8.14 -4.59 -0.04 2.95 16 29 H 0.08 2.67 6.50 -2.39 -0.02 2.65 16 30 H 0.06 2.54 6.77 -2.39 -0.02 2.53 16 Total: -1.00 -63.66 242.85 4.01 -59.65 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.01 Total: 6.95 kcal Atomic # 6 Polarization: -46.62 SS G_CDS: 2.05 Total: -44.57 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.30 Total: -59.81 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.33 kcal Atomic # 16 Polarization: -7.32 SS G_CDS: -1.23 Total: -8.55 kcal Total: -63.66 4.01 -59.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259613920.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.905 kcal (2) G-P(sol) polarization free energy of solvation -63.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds