Wall clock time and date at job start Mon Mar 30 2020 02:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.97022 * 56.26988 * 10 9 7 12 12 C 1.51585 * 109.98899 * 177.64092 * 10 9 7 13 13 C 1.52988 * 109.41732 * 222.02591 * 12 10 9 14 14 C 1.53777 * 115.50557 * 318.18852 * 13 12 10 15 15 S 1.79964 * 113.13374 * 315.96292 * 14 13 12 16 16 C 1.83631 * 102.84647 * 86.70647 * 15 14 13 17 17 C 1.45387 * 109.69372 * 291.07536 * 16 15 14 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.09001 * 109.48006 * 342.00551 * 12 10 9 22 22 H 1.09000 * 109.48124 * 102.04102 * 12 10 9 23 23 H 1.08992 * 108.27621 * 196.62245 * 13 12 10 24 24 H 1.08997 * 108.12643 * 79.64003 * 13 12 10 25 25 H 1.09005 * 108.75054 * 195.02445 * 14 13 12 26 26 H 1.08995 * 108.66208 * 76.84363 * 14 13 12 27 27 H 1.08993 * 109.43972 * 171.00282 * 16 15 14 28 28 H 1.09007 * 109.39262 * 51.11330 * 16 15 14 29 29 H 1.08997 * 108.31089 * 303.20528 * 17 16 15 30 30 H 1.09004 * 108.16344 * 186.13952 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9194 -3.5755 0.8525 12 6 1.4999 -4.9809 0.0592 13 6 2.2129 -5.9252 1.0289 14 6 3.7482 -5.9283 0.9418 15 16 4.3603 -5.9573 -0.7502 16 6 4.4043 -4.1772 -1.1991 17 6 3.0478 -3.6648 -1.3041 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 0.4806 -4.8074 0.4042 22 1 1.4763 -5.4295 -0.9339 23 1 1.8579 -6.9387 0.8421 24 1 1.9286 -5.6471 2.0437 25 1 4.1272 -6.8053 1.4666 26 1 4.1273 -5.0340 1.4363 27 1 4.9125 -4.0568 -2.1558 28 1 4.9427 -3.6232 -0.4301 29 1 2.5098 -4.2674 -2.0359 30 1 3.0989 -2.6417 -1.6768 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259613923.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:58 Heat of formation + Delta-G solvation = -29.595239 kcal Electronic energy + Delta-G solvation = -11313.656292 eV Core-core repulsion = 9426.913187 eV Total energy + Delta-G solvation = -1886.743106 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.52248 -33.15775 -32.41979 -29.98638 -27.11166 -24.32565 -22.18761 -21.22738 -19.04153 -16.33156 -16.01005 -14.83905 -14.54606 -14.24743 -13.94589 -13.53514 -12.97756 -12.50205 -12.06000 -11.56990 -11.31823 -11.00474 -10.83237 -10.77091 -10.54315 -10.35531 -9.96536 -9.65027 -9.24986 -9.14634 -8.91573 -8.36457 -7.38876 -6.01406 -4.03137 2.08830 2.86976 3.28652 3.36730 3.39737 4.44018 5.04782 5.16318 5.21947 5.34471 5.45389 5.59333 5.75202 5.89813 6.03066 6.06169 6.18010 6.31766 6.50220 6.69895 6.73058 6.94820 7.05169 7.19926 7.66662 7.83055 7.98870 8.41776 9.03632 9.60635 11.09776 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.051990 B = 0.009406 C = 0.008558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.431116 B = 2976.140542 C = 3271.076439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.029 3.971 10 C -0.080 4.080 11 H 0.056 0.944 12 C -0.117 4.117 13 C -0.110 4.110 14 C -0.077 4.077 15 S -0.297 6.297 16 C -0.050 4.050 17 C -0.127 4.127 18 H 0.259 0.741 19 H 0.016 0.984 20 H 0.017 0.983 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.167 -9.203 0.158 11.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.098 4.098 11 H 0.074 0.926 12 C -0.155 4.155 13 C -0.150 4.150 14 C -0.225 4.225 15 S -0.071 6.071 16 C -0.197 4.197 17 C -0.165 4.165 18 H 0.069 0.931 19 H 0.034 0.966 20 H 0.035 0.965 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.110 0.890 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.326 -9.977 -0.458 11.822 hybrid contribution 0.090 2.009 0.802 2.165 sum 6.416 -7.968 0.344 10.236 Atomic orbital electron populations 1.69971 1.06027 1.26414 1.50995 1.25022 0.94803 0.99162 0.95483 0.86606 0.80129 0.84105 0.77584 1.19790 1.21052 1.21079 1.21274 0.92945 0.91016 1.50166 0.92676 1.19179 0.93507 0.90890 0.97181 1.21093 0.97882 0.95252 0.95605 0.92558 1.21719 0.99154 0.95510 0.99093 1.21753 0.92748 1.00119 1.00399 1.23218 0.99196 1.05102 0.94994 1.86477 1.85725 1.15407 1.19532 1.22344 1.01660 0.91413 1.04294 1.20643 0.93479 1.02781 0.99632 0.93096 0.96557 0.96458 0.91807 0.91770 0.92704 0.92075 0.89026 0.90032 0.88606 0.90324 0.92203 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.09 8.02 -34.44 -0.28 -14.36 16 8 H 0.06 1.46 7.45 -52.49 -0.39 1.07 16 9 C 0.03 0.74 4.21 -27.88 -0.12 0.62 16 10 C -0.08 -1.58 1.83 -91.24 -0.17 -1.75 16 11 H 0.06 1.13 6.24 -51.93 -0.32 0.81 16 12 C -0.12 -2.02 5.17 -27.45 -0.14 -2.16 16 13 C -0.11 -1.61 5.64 -26.33 -0.15 -1.76 16 14 C -0.08 -1.08 5.60 37.56 0.21 -0.87 16 15 S -0.30 -4.54 21.56 -107.50 -2.32 -6.86 16 16 C -0.05 -0.78 6.06 33.57 0.20 -0.58 16 17 C -0.13 -2.31 4.40 -30.22 -0.13 -2.44 16 18 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 19 H 0.02 0.44 8.10 -51.93 -0.42 0.02 16 20 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.06 1.14 7.66 -51.93 -0.40 0.74 16 22 H 0.06 1.10 6.84 -51.93 -0.36 0.74 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.09 1.12 8.14 -51.69 -0.42 0.69 16 26 H 0.08 1.18 7.06 -51.70 -0.36 0.81 16 27 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.06 1.07 6.99 -51.93 -0.36 0.71 16 30 H 0.09 1.77 6.64 -51.93 -0.34 1.42 16 LS Contribution 246.24 15.07 3.71 3.71 Total: -1.00 -28.67 246.24 -8.19 -36.86 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -4.63 Total: -2.39 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -0.67 Total: -21.82 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.74 Total: -25.86 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -4.54 SS G_CDS: -2.32 Total: -6.86 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.67 -8.19 -36.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259613923.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.260 kcal (2) G-P(sol) polarization free energy of solvation -28.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds