Wall clock time and date at job start Mon Mar 30 2020 02:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.97022 * 56.26988 * 10 9 7 12 12 C 1.51585 * 109.98899 * 177.64092 * 10 9 7 13 13 C 1.52988 * 109.41732 * 222.02591 * 12 10 9 14 14 C 1.53777 * 115.50557 * 318.18852 * 13 12 10 15 15 S 1.79964 * 113.13374 * 315.96292 * 14 13 12 16 16 C 1.83631 * 102.84647 * 86.70647 * 15 14 13 17 17 C 1.45387 * 109.69372 * 291.07536 * 16 15 14 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.09001 * 109.48006 * 342.00551 * 12 10 9 22 22 H 1.09000 * 109.48124 * 102.04102 * 12 10 9 23 23 H 1.08992 * 108.27621 * 196.62245 * 13 12 10 24 24 H 1.08997 * 108.12643 * 79.64003 * 13 12 10 25 25 H 1.09005 * 108.75054 * 195.02445 * 14 13 12 26 26 H 1.08995 * 108.66208 * 76.84363 * 14 13 12 27 27 H 1.08993 * 109.43972 * 171.00282 * 16 15 14 28 28 H 1.09007 * 109.39262 * 51.11330 * 16 15 14 29 29 H 1.08997 * 108.31089 * 303.20528 * 17 16 15 30 30 H 1.09004 * 108.16344 * 186.13952 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9194 -3.5755 0.8525 12 6 1.4999 -4.9809 0.0592 13 6 2.2129 -5.9252 1.0289 14 6 3.7482 -5.9283 0.9418 15 16 4.3603 -5.9573 -0.7502 16 6 4.4043 -4.1772 -1.1991 17 6 3.0478 -3.6648 -1.3041 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 0.4806 -4.8074 0.4042 22 1 1.4763 -5.4295 -0.9339 23 1 1.8579 -6.9387 0.8421 24 1 1.9286 -5.6471 2.0437 25 1 4.1272 -6.8053 1.4666 26 1 4.1273 -5.0340 1.4363 27 1 4.9125 -4.0568 -2.1558 28 1 4.9427 -3.6232 -0.4301 29 1 2.5098 -4.2674 -2.0359 30 1 3.0989 -2.6417 -1.6768 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259613923.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:58 Heat of formation + Delta-G solvation = -44.797707 kcal Electronic energy + Delta-G solvation = -11314.315521 eV Core-core repulsion = 9426.913187 eV Total energy + Delta-G solvation = -1887.402334 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.05456 -35.03705 -33.90679 -31.66431 -28.76771 -25.99477 -23.87388 -22.66931 -20.59709 -18.43804 -17.27767 -16.61515 -15.97939 -15.63394 -15.37040 -14.99449 -14.41274 -14.29260 -13.72245 -13.14471 -13.02874 -12.69909 -12.55843 -12.34748 -12.11335 -11.78456 -11.56808 -11.33429 -11.05175 -10.78922 -10.55441 -10.44182 -8.58991 -8.18008 -6.27170 0.89887 1.38682 1.39719 1.51769 1.68188 2.40930 3.15471 3.78602 3.86602 4.05087 4.22939 4.28074 4.32111 4.62800 4.64186 4.78761 4.85989 5.02191 5.09643 5.25830 5.28343 5.33826 5.41038 5.47502 5.57929 5.82545 5.90641 6.28462 6.89271 7.41213 8.93955 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.051990 B = 0.009406 C = 0.008558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.431116 B = 2976.140542 C = 3271.076439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.958 3.042 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.035 3.965 10 C -0.072 4.072 11 H 0.056 0.944 12 C -0.114 4.114 13 C -0.107 4.107 14 C -0.076 4.076 15 S -0.296 6.296 16 C -0.050 4.050 17 C -0.116 4.116 18 H 0.261 0.739 19 H -0.013 1.013 20 H -0.011 1.011 21 H 0.051 0.949 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.118 0.882 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.846 -9.827 0.354 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.783 3.217 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.564 4.564 8 H 0.080 0.920 9 C -0.002 4.002 10 C -0.090 4.090 11 H 0.075 0.925 12 C -0.152 4.152 13 C -0.147 4.147 14 C -0.225 4.225 15 S -0.070 6.070 16 C -0.197 4.197 17 C -0.155 4.155 18 H 0.070 0.930 19 H 0.006 0.994 20 H 0.007 0.993 21 H 0.069 0.931 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.136 0.864 26 H 0.096 0.904 27 H 0.133 0.867 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.018 -10.614 -0.263 13.305 hybrid contribution -0.483 2.166 0.741 2.339 sum 7.535 -8.449 0.478 11.331 Atomic orbital electron populations 1.70107 1.07775 1.27452 1.52249 1.25940 0.95664 1.03161 0.95188 0.85496 0.79277 0.79312 0.77574 1.18423 1.20664 1.20715 1.21658 0.93407 0.91993 1.49354 0.92027 1.19067 0.93921 0.92862 0.94376 1.20916 0.96980 0.94471 0.96647 0.92526 1.21632 0.98574 0.94770 1.00200 1.21690 0.93112 1.00154 0.99715 1.23297 0.98545 1.06236 0.94387 1.86509 1.85764 1.14272 1.20449 1.22261 0.99797 0.92067 1.05575 1.20512 0.95046 1.01563 0.98355 0.92986 0.99432 0.99254 0.93068 0.91502 0.90876 0.91458 0.86415 0.90370 0.86741 0.90121 0.92078 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 7 C -0.53 -29.10 8.02 25.60 0.21 -28.89 16 8 H 0.06 3.26 7.45 -2.91 -0.02 3.23 16 9 C 0.03 1.80 4.21 29.85 0.13 1.93 16 10 C -0.07 -2.83 1.83 -11.20 -0.02 -2.85 16 11 H 0.06 2.23 6.24 -2.39 -0.01 2.22 16 12 C -0.11 -3.85 5.17 30.13 0.16 -3.70 16 13 C -0.11 -2.88 5.64 30.85 0.17 -2.70 16 14 C -0.08 -1.93 5.60 72.24 0.40 -1.52 16 15 S -0.30 -8.25 21.56 -56.49 -1.22 -9.47 16 16 C -0.05 -1.46 6.06 69.66 0.42 -1.04 16 17 C -0.12 -4.15 4.40 28.33 0.12 -4.03 16 18 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 19 H -0.01 -0.72 8.10 -2.39 -0.02 -0.74 16 20 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 21 H 0.05 1.84 7.66 -2.39 -0.02 1.82 16 22 H 0.07 2.21 6.84 -2.39 -0.02 2.20 16 23 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.12 2.40 8.14 -2.53 -0.02 2.38 16 26 H 0.08 2.05 7.06 -2.54 -0.02 2.03 16 27 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 28 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 29 H 0.06 2.14 6.99 -2.39 -0.02 2.13 16 30 H 0.06 2.51 6.64 -2.38 -0.02 2.50 16 Total: -1.00 -61.25 246.24 4.24 -57.01 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.09 Total: 5.50 kcal Atomic # 6 Polarization: -44.53 SS G_CDS: 2.05 Total: -42.47 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.28 Total: -56.54 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.22 Total: -9.47 kcal Total: -61.25 4.24 -57.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259613923.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.212 kcal (2) G-P(sol) polarization free energy of solvation -61.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds