Wall clock time and date at job start Mon Mar 30 2020 03:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46642 * 2 1 4 4 C 1.50699 * 109.47394 * 119.99992 * 2 1 3 5 5 H 1.07998 * 119.99955 * 119.99860 * 4 2 1 6 6 C 1.37877 * 119.99830 * 300.00560 * 4 2 1 7 7 N 1.31513 * 119.99739 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00105 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47220 * 90.00362 * 8 6 4 10 10 H 1.48510 * 109.46742 * 210.00218 * 8 6 4 11 11 H 1.48497 * 109.46956 * 329.99781 * 8 6 4 12 12 C 1.52999 * 109.47196 * 240.00394 * 2 1 3 13 13 H 1.08997 * 109.38835 * 300.19642 * 12 2 1 14 14 C 1.52585 * 109.30996 * 180.44394 * 12 2 1 15 15 C 1.52583 * 110.72705 * 169.22720 * 14 12 2 16 16 C 1.53099 * 109.95720 * 70.67373 * 15 14 12 17 17 S 1.81795 * 108.93887 * 297.04912 * 16 15 14 18 18 C 1.53098 * 109.39086 * 59.99849 * 12 2 1 19 19 H 1.08998 * 109.47637 * 299.99875 * 1 2 3 20 20 H 1.09005 * 109.47561 * 60.00223 * 1 2 3 21 21 H 1.08999 * 109.47307 * 179.97438 * 1 2 3 22 22 H 0.96996 * 120.00547 * 179.97438 * 7 6 4 23 23 H 1.09001 * 109.22407 * 289.54731 * 14 12 2 24 24 H 1.08996 * 109.22508 * 48.90610 * 14 12 2 25 25 H 1.08997 * 109.38610 * 190.82550 * 15 14 12 26 26 H 1.09000 * 109.38622 * 310.62345 * 15 14 12 27 27 H 1.08993 * 109.57369 * 56.78326 * 16 15 14 28 28 H 1.08999 * 109.57072 * 177.16961 * 16 15 14 29 29 H 1.09002 * 109.57593 * 302.88312 * 18 12 2 30 30 H 1.09001 * 109.57569 * 63.14216 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6257 1.2797 2.6541 9 1 -0.8022 0.8742 2.6993 10 1 0.9771 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 6 2.0400 -0.7212 -1.2493 13 1 1.6730 -1.7475 -1.2497 14 6 3.5658 -0.7287 -1.2400 15 6 4.1078 -1.6604 -2.3199 16 6 3.8587 -1.0564 -3.7044 17 16 2.0662 -0.9146 -3.9725 18 6 1.5286 0.0020 -2.4980 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.9032 -0.5282 4.4375 23 1 3.9308 0.2822 -1.4218 24 1 3.9171 -1.0665 -0.2650 25 1 5.1788 -1.7999 -2.1732 26 1 3.6045 -2.6249 -2.2515 27 1 4.3135 -0.0673 -3.7585 28 1 4.2924 -1.7022 -4.4679 29 1 0.4398 0.0479 -2.4734 30 1 1.9362 1.0126 -2.5275 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259616414.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:47 Heat of formation + Delta-G solvation = -22.770053 kcal Electronic energy + Delta-G solvation = -11448.926418 eV Core-core repulsion = 9562.479274 eV Total energy + Delta-G solvation = -1886.447143 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.48033 -33.82069 -31.87171 -29.15194 -27.13410 -24.82994 -22.93216 -20.60833 -19.05397 -16.89411 -16.27763 -14.66025 -14.56269 -14.32745 -13.22174 -12.99669 -12.87652 -12.81240 -12.55601 -12.12876 -11.44361 -11.03225 -10.87104 -10.79916 -10.56960 -10.21716 -9.90268 -9.74043 -9.52124 -9.03085 -8.85266 -8.55098 -7.39142 -6.07870 -4.06573 2.11920 2.85412 3.26792 3.37082 3.39329 4.40496 5.05040 5.15389 5.25003 5.34154 5.46422 5.58057 5.74466 5.83376 6.02927 6.11075 6.24620 6.30752 6.40510 6.47502 6.72826 6.81925 6.84818 7.01497 7.16322 7.51190 7.75975 8.50823 8.95297 9.54903 11.05066 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.054969 B = 0.010754 C = 0.009515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.257687 B = 2603.102473 C = 2942.064012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.016 3.984 3 H 0.026 0.974 4 C -0.509 4.509 5 H 0.077 0.923 6 C 0.068 3.932 7 N -0.902 5.902 8 Si 0.889 3.111 9 H -0.281 1.281 10 H -0.299 1.299 11 H -0.268 1.268 12 C -0.066 4.066 13 H 0.075 0.925 14 C -0.120 4.120 15 C -0.122 4.122 16 C -0.074 4.074 17 S -0.301 6.301 18 C -0.070 4.070 19 H 0.037 0.963 20 H 0.029 0.971 21 H 0.052 0.948 22 H 0.263 0.737 23 H 0.051 0.949 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.240 1.491 -11.281 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.005 4.005 3 H 0.044 0.956 4 C -0.547 4.547 5 H 0.095 0.905 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.227 1.227 11 H -0.193 1.193 12 C -0.086 4.086 13 H 0.093 0.907 14 C -0.158 4.158 15 C -0.161 4.161 16 C -0.222 4.222 17 S -0.074 6.074 18 C -0.218 4.218 19 H 0.056 0.944 20 H 0.048 0.952 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.111 0.889 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.636 1.112 -11.991 12.059 hybrid contribution 0.035 1.288 1.230 1.781 sum 0.671 2.401 -10.761 11.046 Atomic orbital electron populations 1.22242 0.99496 1.00719 0.98319 1.19186 0.91508 0.96346 0.93450 0.95613 1.21017 1.31788 1.13425 0.88456 0.90521 1.25019 0.95743 0.96604 0.95940 1.69893 1.45837 1.40387 0.97913 0.86828 0.80602 0.83862 0.76704 1.20773 1.22724 1.19276 1.21200 0.94856 0.99862 0.92693 0.90700 1.21572 0.95731 0.98551 0.99896 1.21773 1.01205 1.00203 0.92899 1.23400 0.93628 1.03969 1.01183 1.86559 1.09526 1.76856 1.34442 1.23753 1.04088 1.00113 0.93813 0.94396 0.95211 0.92880 0.92725 0.93021 0.88897 0.91530 0.90934 0.90418 0.88735 0.88012 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 8.32 37.16 0.31 -2.88 16 2 C 0.02 0.35 1.48 -91.78 -0.14 0.22 16 3 H 0.03 0.60 7.20 -51.93 -0.37 0.22 16 4 C -0.51 -13.65 8.25 -34.44 -0.28 -13.94 16 5 H 0.08 2.21 6.98 -52.49 -0.37 1.84 16 6 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 7 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 8 Si 0.89 21.85 24.37 -169.99 -4.14 17.71 16 9 H -0.28 -6.77 6.87 56.52 0.39 -6.39 16 10 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.27 -6.30 6.53 56.52 0.37 -5.93 16 12 C -0.07 -1.25 1.60 -90.78 -0.15 -1.40 16 13 H 0.07 1.50 8.06 -51.93 -0.42 1.08 16 14 C -0.12 -2.13 4.82 -27.16 -0.13 -2.26 16 15 C -0.12 -1.79 5.76 -26.89 -0.15 -1.94 16 16 C -0.07 -0.99 6.45 37.21 0.24 -0.75 16 17 S -0.30 -4.69 22.34 -107.50 -2.40 -7.10 16 18 C -0.07 -1.16 5.45 37.21 0.20 -0.96 16 19 H 0.04 0.85 3.27 -51.93 -0.17 0.68 16 20 H 0.03 0.53 6.36 -51.93 -0.33 0.20 16 21 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 24 H 0.09 1.88 6.25 -51.93 -0.32 1.56 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.65 6.28 -51.93 -0.33 1.32 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 238.30 15.07 3.59 3.59 Total: -1.00 -28.41 238.30 -6.82 -35.23 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -4.44 Total: -0.95 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -0.20 Total: -22.07 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.77 Total: -26.41 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.14 Total: 17.71 kcal Atomic # 16 Polarization: -4.69 SS G_CDS: -2.40 Total: -7.10 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -28.41 -6.82 -35.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259616414.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.457 kcal (2) G-P(sol) polarization free energy of solvation -28.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds