Wall clock time and date at job start Mon Mar 30 2020 03:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46642 * 2 1 4 4 C 1.50699 * 109.47394 * 119.99992 * 2 1 3 5 5 H 1.07998 * 119.99955 * 119.99860 * 4 2 1 6 6 C 1.37877 * 119.99830 * 300.00560 * 4 2 1 7 7 N 1.31513 * 119.99739 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00105 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47220 * 90.00362 * 8 6 4 10 10 H 1.48510 * 109.46742 * 210.00218 * 8 6 4 11 11 H 1.48497 * 109.46956 * 329.99781 * 8 6 4 12 12 C 1.52999 * 109.47196 * 240.00394 * 2 1 3 13 13 H 1.08997 * 109.38835 * 300.19642 * 12 2 1 14 14 C 1.52585 * 109.30996 * 180.44394 * 12 2 1 15 15 C 1.52583 * 110.72705 * 169.22720 * 14 12 2 16 16 C 1.53099 * 109.95720 * 70.67373 * 15 14 12 17 17 S 1.81795 * 108.93887 * 297.04912 * 16 15 14 18 18 C 1.53098 * 109.39086 * 59.99849 * 12 2 1 19 19 H 1.08998 * 109.47637 * 299.99875 * 1 2 3 20 20 H 1.09005 * 109.47561 * 60.00223 * 1 2 3 21 21 H 1.08999 * 109.47307 * 179.97438 * 1 2 3 22 22 H 0.96996 * 120.00547 * 179.97438 * 7 6 4 23 23 H 1.09001 * 109.22407 * 289.54731 * 14 12 2 24 24 H 1.08996 * 109.22508 * 48.90610 * 14 12 2 25 25 H 1.08997 * 109.38610 * 190.82550 * 15 14 12 26 26 H 1.09000 * 109.38622 * 310.62345 * 15 14 12 27 27 H 1.08993 * 109.57369 * 56.78326 * 16 15 14 28 28 H 1.08999 * 109.57072 * 177.16961 * 16 15 14 29 29 H 1.09002 * 109.57593 * 302.88312 * 18 12 2 30 30 H 1.09001 * 109.57569 * 63.14216 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6257 1.2797 2.6541 9 1 -0.8022 0.8742 2.6993 10 1 0.9771 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 6 2.0400 -0.7212 -1.2493 13 1 1.6730 -1.7475 -1.2497 14 6 3.5658 -0.7287 -1.2400 15 6 4.1078 -1.6604 -2.3199 16 6 3.8587 -1.0564 -3.7044 17 16 2.0662 -0.9146 -3.9725 18 6 1.5286 0.0020 -2.4980 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.9032 -0.5282 4.4375 23 1 3.9308 0.2822 -1.4218 24 1 3.9171 -1.0665 -0.2650 25 1 5.1788 -1.7999 -2.1732 26 1 3.6045 -2.6249 -2.2515 27 1 4.3135 -0.0673 -3.7585 28 1 4.2924 -1.7022 -4.4679 29 1 0.4398 0.0479 -2.4734 30 1 1.9362 1.0126 -2.5275 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259616414.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:47 Heat of formation + Delta-G solvation = -39.390813 kcal Electronic energy + Delta-G solvation = -11449.647148 eV Core-core repulsion = 9562.479274 eV Total energy + Delta-G solvation = -1887.167874 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.02676 -35.45114 -33.76009 -30.72422 -28.55838 -26.62737 -24.50207 -22.01729 -20.70964 -18.90546 -17.66114 -16.49574 -16.02009 -15.67250 -14.82967 -14.65695 -14.40528 -14.20919 -13.97881 -13.81543 -13.09185 -12.55079 -12.44410 -12.39232 -12.17923 -11.85658 -11.56388 -11.46325 -11.10692 -10.83296 -10.61630 -10.40380 -8.61236 -8.25622 -6.27426 0.93082 1.31935 1.36792 1.47007 1.64673 2.34907 3.10333 3.81768 3.90177 4.03552 4.12205 4.32576 4.39797 4.60591 4.63582 4.70651 4.75201 4.85730 4.92447 5.05750 5.13922 5.17710 5.31394 5.47063 5.53909 5.73951 5.77489 6.36367 6.79137 7.37040 8.90794 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.054969 B = 0.010754 C = 0.009515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.257687 B = 2603.102473 C = 2942.064012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.014 3.986 3 H 0.025 0.975 4 C -0.503 4.503 5 H 0.040 0.960 6 C 0.008 3.992 7 N -0.953 5.953 8 Si 0.948 3.052 9 H -0.272 1.272 10 H -0.304 1.304 11 H -0.246 1.246 12 C -0.061 4.061 13 H 0.058 0.942 14 C -0.119 4.119 15 C -0.116 4.116 16 C -0.066 4.066 17 S -0.309 6.309 18 C -0.065 4.065 19 H 0.026 0.974 20 H 0.066 0.934 21 H 0.048 0.952 22 H 0.263 0.737 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.108 0.892 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 2.743 -13.480 13.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.007 4.007 3 H 0.043 0.957 4 C -0.541 4.541 5 H 0.058 0.942 6 C -0.189 4.189 7 N -0.594 5.594 8 Si 0.776 3.224 9 H -0.198 1.198 10 H -0.233 1.233 11 H -0.170 1.170 12 C -0.081 4.081 13 H 0.076 0.924 14 C -0.156 4.156 15 C -0.155 4.155 16 C -0.214 4.214 17 S -0.082 6.082 18 C -0.213 4.213 19 H 0.045 0.955 20 H 0.085 0.915 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.105 0.895 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.138 0.862 29 H 0.126 0.874 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.235 2.364 -14.221 14.418 hybrid contribution 0.247 0.800 1.880 2.058 sum 0.482 3.164 -12.341 12.749 Atomic orbital electron populations 1.22183 0.98039 1.00943 0.99540 1.19166 0.92695 0.95876 0.92954 0.95660 1.21336 1.30233 1.12142 0.90436 0.94193 1.25858 0.97460 0.99865 0.95678 1.70048 1.48189 1.42644 0.98509 0.85855 0.79037 0.80431 0.77043 1.19831 1.23259 1.16972 1.21056 0.95577 0.98786 0.92659 0.92398 1.21497 0.95111 0.99690 0.99322 1.21687 1.02146 0.98908 0.92714 1.23474 0.91998 1.05237 1.00662 1.86636 1.11583 1.76768 1.33192 1.23590 1.04524 1.00279 0.92892 0.95492 0.91518 0.93302 0.92847 0.92228 0.92534 0.89537 0.91844 0.89028 0.86224 0.87422 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.01 8.32 71.98 0.60 -5.41 16 2 C 0.01 0.60 1.48 -11.54 -0.02 0.58 16 3 H 0.03 1.12 7.20 -2.38 -0.02 1.10 16 4 C -0.50 -27.62 8.25 25.60 0.21 -27.40 16 5 H 0.04 2.42 6.98 -2.91 -0.02 2.40 16 6 C 0.01 0.44 5.45 84.65 0.46 0.90 16 7 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 8 Si 0.95 44.81 24.37 68.60 1.67 46.48 16 9 H -0.27 -12.38 6.87 99.48 0.68 -11.69 16 10 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 11 H -0.25 -10.65 6.53 99.48 0.65 -10.00 16 12 C -0.06 -2.24 1.60 -10.90 -0.02 -2.26 16 13 H 0.06 2.31 8.06 -2.39 -0.02 2.29 16 14 C -0.12 -4.12 4.82 30.32 0.15 -3.98 16 15 C -0.12 -3.16 5.76 30.49 0.18 -2.99 16 16 C -0.07 -1.54 6.45 72.02 0.46 -1.08 16 17 S -0.31 -8.72 22.34 -56.49 -1.26 -9.99 16 18 C -0.07 -1.97 5.45 72.01 0.39 -1.58 16 19 H 0.03 1.13 3.27 -2.39 -0.01 1.12 16 20 H 0.07 2.17 6.36 -2.38 -0.02 2.16 16 21 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 23 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 24 H 0.06 2.36 6.25 -2.39 -0.01 2.35 16 25 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.06 1.85 8.06 -2.39 -0.02 1.84 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.11 3.13 6.28 -2.39 -0.01 3.11 16 30 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -61.82 238.30 4.15 -57.67 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.02 Total: 8.08 kcal Atomic # 6 Polarization: -45.63 SS G_CDS: 2.42 Total: -43.22 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.30 Total: -59.03 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.67 Total: 46.48 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.26 Total: -9.99 kcal Total: -61.82 4.15 -57.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259616414.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.276 kcal (2) G-P(sol) polarization free energy of solvation -61.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds