Wall clock time and date at job start Mon Mar 30 2020 03:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47515 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46678 * 119.99923 * 8 6 4 11 11 H 1.48493 * 109.47346 * 239.99833 * 8 6 4 12 12 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 13 13 H 1.08995 * 109.39451 * 299.99705 * 12 2 1 14 14 C 1.52588 * 109.39155 * 59.80438 * 12 2 1 15 15 C 1.52619 * 110.70089 * 190.92110 * 14 12 2 16 16 C 1.53098 * 109.87191 * 289.17683 * 15 14 12 17 17 S 1.81745 * 108.84174 * 63.06435 * 16 15 14 18 18 C 1.53098 * 109.38600 * 180.19542 * 12 2 1 19 19 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 20 20 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 21 21 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 22 22 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 23 23 H 1.09002 * 109.22171 * 311.14178 * 14 12 2 24 24 H 1.09003 * 109.22628 * 70.49962 * 14 12 2 25 25 H 1.09005 * 109.40134 * 169.07782 * 15 14 12 26 26 H 1.08996 * 109.38766 * 49.27162 * 15 14 12 27 27 H 1.09007 * 109.57835 * 303.25552 * 16 15 14 28 28 H 1.09003 * 109.68397 * 182.93596 * 16 15 14 29 29 H 1.08995 * 109.57901 * 296.63526 * 18 12 2 30 30 H 1.08998 * 109.57508 * 57.02441 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1485 -2.2857 3.6037 10 1 3.1474 -0.1858 4.8159 11 1 1.1680 -1.5867 4.8165 12 6 2.0399 -0.7213 -1.2493 13 1 1.6759 -1.7487 -1.2479 14 6 1.5262 -0.0034 -2.4939 15 6 1.7856 -0.8391 -3.7443 16 6 3.2843 -0.8573 -4.0565 17 16 4.1599 -1.6653 -2.6841 18 6 3.5709 -0.7245 -1.2449 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 0.7091 1.1614 3.4844 23 1 0.4543 0.1668 -2.3933 24 1 2.0339 0.9564 -2.5899 25 1 1.2457 -0.4071 -4.5870 26 1 1.4385 -1.8586 -3.5766 27 1 3.6463 0.1647 -4.1695 28 1 3.4605 -1.4112 -4.9787 29 1 3.9385 0.3000 -1.3030 30 1 3.9325 -1.1929 -0.3296 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259616417.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:49 Heat of formation + Delta-G solvation = -44.205004 kcal Electronic energy + Delta-G solvation = -11395.350615 eV Core-core repulsion = 9507.973982 eV Total energy + Delta-G solvation = -1887.376633 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.90882 -35.47793 -33.24555 -30.49760 -28.32614 -26.74059 -24.16355 -22.38198 -20.64802 -18.31904 -17.49479 -16.59690 -16.02009 -15.56043 -14.70150 -14.42588 -14.32238 -13.99901 -13.81453 -13.32413 -12.89155 -12.58815 -12.45186 -12.29946 -12.05847 -11.99529 -11.85964 -11.50989 -11.03401 -10.64651 -10.39313 -10.33847 -8.61311 -8.07656 -6.19833 0.95516 1.38422 1.41636 1.51753 1.69559 2.43297 3.20503 3.84512 3.94772 4.08301 4.20167 4.41500 4.53060 4.65875 4.80013 4.85697 4.94292 4.95521 5.17327 5.19669 5.27000 5.32797 5.43501 5.49086 5.65130 5.99943 6.16535 6.40692 6.91458 7.48060 8.96955 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.048756 B = 0.010548 C = 0.009050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.150360 B = 2653.987592 C = 3093.341068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.050 3.950 3 H -0.003 1.003 4 C -0.522 4.522 5 H 0.052 0.948 6 C 0.012 3.988 7 N -0.917 5.917 8 Si 0.946 3.054 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.282 1.282 12 C -0.067 4.067 13 H 0.056 0.944 14 C -0.126 4.126 15 C -0.114 4.114 16 C -0.066 4.066 17 S -0.325 6.325 18 C -0.047 4.047 19 H 0.051 0.949 20 H 0.038 0.962 21 H 0.023 0.977 22 H 0.259 0.741 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.122 0.878 29 H 0.071 0.929 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 -2.000 -11.225 11.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.029 3.971 3 H 0.015 0.985 4 C -0.560 4.560 5 H 0.070 0.930 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.772 3.228 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.208 1.208 12 C -0.087 4.087 13 H 0.075 0.925 14 C -0.163 4.163 15 C -0.152 4.152 16 C -0.214 4.214 17 S -0.098 6.098 18 C -0.195 4.195 19 H 0.070 0.930 20 H 0.056 0.944 21 H 0.043 0.957 22 H 0.068 0.932 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.115 0.885 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.140 0.860 29 H 0.089 0.911 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.638 -2.760 -11.153 11.789 hybrid contribution -0.533 0.741 1.414 1.683 sum 2.105 -2.019 -9.740 10.167 Atomic orbital electron populations 1.21713 0.98320 0.98725 0.99894 1.18642 0.92847 0.94081 0.91481 0.98487 1.21566 1.30560 1.12065 0.91834 0.92988 1.25676 0.95486 0.95721 1.01709 1.70016 1.37924 1.24163 1.23632 0.85689 0.78169 0.78804 0.80124 1.19349 1.20832 1.20775 1.21215 0.92325 0.99510 0.95675 0.92532 1.21682 1.02159 0.98640 0.93854 1.21694 0.94311 1.01166 0.98044 1.23497 0.97227 1.03468 0.97199 1.86644 1.64020 1.52963 1.06171 1.23363 0.99069 1.00854 0.96200 0.92987 0.94368 0.95746 0.93187 0.90839 0.92498 0.88484 0.91367 0.89356 0.86031 0.91067 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.07 8.63 71.98 0.62 -5.45 16 2 C 0.05 2.41 1.89 -11.54 -0.02 2.39 16 3 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 4 C -0.52 -28.22 7.79 25.60 0.20 -28.02 16 5 H 0.05 2.80 6.70 -2.91 -0.02 2.78 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -52.83 11.32 21.45 0.24 -52.59 16 8 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 C -0.07 -2.65 1.59 -10.90 -0.02 -2.67 16 13 H 0.06 2.35 8.05 -2.39 -0.02 2.33 16 14 C -0.13 -3.98 4.82 30.33 0.15 -3.83 16 15 C -0.11 -2.79 5.76 30.50 0.18 -2.61 16 16 C -0.07 -1.59 6.45 72.01 0.46 -1.12 16 17 S -0.33 -10.56 22.33 -56.49 -1.26 -11.82 16 18 C -0.05 -1.80 5.52 72.01 0.40 -1.40 16 19 H 0.05 2.77 6.07 -2.39 -0.01 2.75 16 20 H 0.04 1.55 6.19 -2.39 -0.01 1.53 16 21 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 23 H 0.07 2.33 5.86 -2.39 -0.01 2.31 16 24 H 0.06 1.78 8.08 -2.39 -0.02 1.76 16 25 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.07 1.77 8.05 -2.39 -0.02 1.75 16 27 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.12 2.32 8.14 -2.39 -0.02 2.31 16 29 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.09 3.79 6.52 -2.39 -0.02 3.77 16 Total: -1.00 -58.36 244.94 4.52 -53.84 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.10 Total: 6.25 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 2.41 Total: -41.58 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.24 Total: -52.59 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -10.56 SS G_CDS: -1.26 Total: -11.82 kcal Total: -58.36 4.52 -53.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259616417.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.639 kcal (2) G-P(sol) polarization free energy of solvation -58.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds