Wall clock time and date at job start Mon Mar 30 2020 03:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47618 * 2 1 4 4 C 1.50705 * 109.47369 * 239.99593 * 2 1 3 5 5 H 1.07998 * 120.00228 * 245.59529 * 4 2 1 6 6 C 1.37873 * 119.99659 * 65.58581 * 4 2 1 7 7 N 1.31520 * 120.00156 * 196.83384 * 6 4 2 8 8 Si 1.86805 * 120.00170 * 16.55832 * 6 4 2 9 9 H 1.48504 * 109.47154 * 180.27441 * 8 6 4 10 10 H 1.48496 * 109.46986 * 300.27433 * 8 6 4 11 11 H 1.48501 * 109.46895 * 60.27221 * 8 6 4 12 12 C 1.53004 * 109.47212 * 120.00018 * 2 1 3 13 13 H 1.08998 * 109.39088 * 59.99276 * 12 2 1 14 14 C 1.52582 * 109.38465 * 300.19640 * 12 2 1 15 15 C 1.52588 * 110.72165 * 169.17540 * 14 12 2 16 16 C 1.53099 * 109.95536 * 70.68091 * 15 14 12 17 17 S 1.81751 * 108.83609 * 296.97026 * 16 15 14 18 18 C 1.53094 * 109.39198 * 179.80184 * 12 2 1 19 19 H 1.09006 * 109.47342 * 307.07945 * 1 2 3 20 20 H 1.09003 * 109.47204 * 67.07732 * 1 2 3 21 21 H 1.09002 * 109.47462 * 187.08003 * 1 2 3 22 22 H 0.97002 * 119.99329 * 354.94629 * 7 6 4 23 23 H 1.08995 * 109.22745 * 289.49287 * 14 12 2 24 24 H 1.08995 * 109.22796 * 48.89873 * 14 12 2 25 25 H 1.09005 * 109.38947 * 190.82172 * 15 14 12 26 26 H 1.08994 * 109.39556 * 310.62336 * 15 14 12 27 27 H 1.08999 * 109.57933 * 56.77689 * 16 15 14 28 28 H 1.09001 * 109.57477 * 177.16970 * 16 15 14 29 29 H 1.09001 * 109.57716 * 302.97908 * 18 12 2 30 30 H 1.09001 * 109.57722 * 63.36094 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5767 -1.6383 -1.1339 6 6 1.7969 -0.1762 -2.4794 7 7 1.9285 -0.9268 -3.5513 8 14 1.2833 1.6119 -2.6487 9 1 1.0868 1.9367 -4.0844 10 1 0.0128 1.8338 -1.9127 11 1 2.3420 2.4866 -2.0836 12 6 2.0400 -0.7213 1.2493 13 1 1.6758 -1.7486 1.2480 14 6 1.5263 -0.0033 2.4938 15 6 1.7875 -0.8372 3.7446 16 6 3.2865 -0.8572 4.0556 17 16 4.1598 -1.6673 2.6829 18 6 3.5709 -0.7245 1.2449 19 1 -0.3634 0.6196 0.8199 20 1 -0.3634 0.4003 -0.9465 21 1 -0.3634 -1.0198 0.1267 22 1 2.2616 -1.8342 -3.4700 23 1 2.0340 0.9564 2.5897 24 1 0.4543 0.1662 2.3936 25 1 1.2489 -0.4039 4.5874 26 1 1.4401 -1.8569 3.5789 27 1 3.6499 0.1642 4.1676 28 1 3.4608 -1.4121 4.9775 29 1 3.9326 -1.1929 0.3295 30 1 3.9385 0.3000 1.3029 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259616420.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:52 Heat of formation + Delta-G solvation = -30.601949 kcal Electronic energy + Delta-G solvation = -11442.354120 eV Core-core repulsion = 9555.567360 eV Total energy + Delta-G solvation = -1886.786760 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.52238 -33.84603 -31.70569 -29.31030 -26.93759 -24.43604 -22.74494 -20.81192 -18.93567 -17.45258 -16.14726 -14.96326 -14.39100 -13.92126 -13.23685 -13.09648 -12.98758 -12.71717 -12.51769 -11.72062 -11.24929 -11.09271 -11.05071 -10.77022 -10.41359 -10.31736 -9.96337 -9.65504 -9.47007 -9.15381 -8.74084 -8.18419 -7.32172 -6.42368 -4.04014 2.19090 2.97014 3.38825 3.42452 3.60885 4.50131 4.94462 5.04772 5.24874 5.33020 5.47008 5.60746 5.72002 5.84118 5.96412 6.15343 6.24503 6.30699 6.40065 6.49721 6.68261 6.74111 6.88402 6.92415 7.27165 7.52468 8.16447 8.39366 8.92101 9.64442 10.96906 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.049784 B = 0.010997 C = 0.009905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.293020 B = 2545.533494 C = 2826.062920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.023 3.977 3 H 0.019 0.981 4 C -0.596 4.596 5 H 0.057 0.943 6 C 0.029 3.971 7 N -0.909 5.909 8 Si 1.046 2.954 9 H -0.288 1.288 10 H -0.274 1.274 11 H -0.285 1.285 12 C -0.067 4.067 13 H 0.071 0.929 14 C -0.131 4.131 15 C -0.120 4.120 16 C -0.076 4.076 17 S -0.307 6.307 18 C -0.049 4.049 19 H 0.023 0.977 20 H 0.053 0.947 21 H 0.041 0.959 22 H 0.267 0.733 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 2.708 12.680 12.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.002 3.998 3 H 0.037 0.963 4 C -0.634 4.634 5 H 0.075 0.925 6 C -0.176 4.176 7 N -0.544 5.544 8 Si 0.876 3.124 9 H -0.214 1.214 10 H -0.201 1.201 11 H -0.211 1.211 12 C -0.087 4.087 13 H 0.089 0.911 14 C -0.169 4.169 15 C -0.159 4.159 16 C -0.224 4.224 17 S -0.080 6.080 18 C -0.197 4.197 19 H 0.042 0.958 20 H 0.071 0.929 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.134 0.866 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.063 2.976 11.622 11.998 hybrid contribution -0.265 -0.211 1.071 1.123 sum -0.201 2.765 12.694 12.993 Atomic orbital electron populations 1.22281 0.99040 0.99707 0.99536 1.19026 0.91986 0.95589 0.93223 0.96304 1.21985 1.40237 1.09893 0.91262 0.92520 1.25751 0.94758 1.04799 0.92284 1.70858 1.41835 1.10114 1.31573 0.84024 0.77065 0.75561 0.75793 1.21403 1.20072 1.21147 1.21235 0.92200 1.00460 0.94849 0.91061 1.21756 1.02276 0.98591 0.94233 1.21731 0.93963 1.01765 0.98422 1.23346 0.97952 1.02810 0.98335 1.86697 1.63373 1.52398 1.05495 1.23589 0.99225 1.00943 0.95926 0.95806 0.92858 0.93950 0.92321 0.92557 0.90874 0.91736 0.90944 0.90474 0.88759 0.86628 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.30 37.16 0.31 -2.84 16 2 C 0.02 0.51 1.47 -91.77 -0.14 0.37 16 3 H 0.02 0.43 6.82 -51.93 -0.35 0.08 16 4 C -0.60 -16.11 7.94 -34.44 -0.27 -16.38 16 5 H 0.06 1.65 7.18 -52.49 -0.38 1.28 16 6 C 0.03 0.81 5.30 -17.82 -0.09 0.72 16 7 N -0.91 -27.75 13.70 55.43 0.76 -26.99 16 8 Si 1.05 24.97 26.26 -169.99 -4.46 20.51 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.27 -6.05 5.71 56.52 0.32 -5.72 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C -0.07 -1.30 1.58 -90.78 -0.14 -1.45 16 13 H 0.07 1.48 8.05 -51.93 -0.42 1.07 16 14 C -0.13 -2.08 4.82 -27.16 -0.13 -2.21 16 15 C -0.12 -1.62 5.75 -26.89 -0.15 -1.78 16 16 C -0.08 -1.03 6.45 37.21 0.24 -0.79 16 17 S -0.31 -5.23 22.33 -107.50 -2.40 -7.63 16 18 C -0.05 -0.94 5.52 37.21 0.21 -0.74 16 19 H 0.02 0.43 6.57 -51.93 -0.34 0.09 16 20 H 0.05 1.20 4.80 -51.93 -0.25 0.95 16 21 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.27 8.13 8.73 -40.82 -0.36 7.78 16 23 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 24 H 0.07 1.13 6.01 -51.93 -0.31 0.82 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.12 2.49 6.63 -51.93 -0.34 2.15 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 240.98 15.07 3.63 3.63 Total: -1.00 -28.53 240.98 -7.23 -35.76 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -4.58 Total: -0.20 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -0.18 Total: -25.09 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.76 Total: -26.99 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -4.46 Total: 20.51 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -2.40 Total: -7.63 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.53 -7.23 -35.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259616420.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.160 kcal (2) G-P(sol) polarization free energy of solvation -28.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds