Wall clock time and date at job start Mon Mar 30 2020 03:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47618 * 2 1 4 4 C 1.50705 * 109.47369 * 239.99593 * 2 1 3 5 5 H 1.07998 * 120.00228 * 245.59529 * 4 2 1 6 6 C 1.37873 * 119.99659 * 65.58581 * 4 2 1 7 7 N 1.31520 * 120.00156 * 196.83384 * 6 4 2 8 8 Si 1.86805 * 120.00170 * 16.55832 * 6 4 2 9 9 H 1.48504 * 109.47154 * 180.27441 * 8 6 4 10 10 H 1.48496 * 109.46986 * 300.27433 * 8 6 4 11 11 H 1.48501 * 109.46895 * 60.27221 * 8 6 4 12 12 C 1.53004 * 109.47212 * 120.00018 * 2 1 3 13 13 H 1.08998 * 109.39088 * 59.99276 * 12 2 1 14 14 C 1.52582 * 109.38465 * 300.19640 * 12 2 1 15 15 C 1.52588 * 110.72165 * 169.17540 * 14 12 2 16 16 C 1.53099 * 109.95536 * 70.68091 * 15 14 12 17 17 S 1.81751 * 108.83609 * 296.97026 * 16 15 14 18 18 C 1.53094 * 109.39198 * 179.80184 * 12 2 1 19 19 H 1.09006 * 109.47342 * 307.07945 * 1 2 3 20 20 H 1.09003 * 109.47204 * 67.07732 * 1 2 3 21 21 H 1.09002 * 109.47462 * 187.08003 * 1 2 3 22 22 H 0.97002 * 119.99329 * 354.94629 * 7 6 4 23 23 H 1.08995 * 109.22745 * 289.49287 * 14 12 2 24 24 H 1.08995 * 109.22796 * 48.89873 * 14 12 2 25 25 H 1.09005 * 109.38947 * 190.82172 * 15 14 12 26 26 H 1.08994 * 109.39556 * 310.62336 * 15 14 12 27 27 H 1.08999 * 109.57933 * 56.77689 * 16 15 14 28 28 H 1.09001 * 109.57477 * 177.16970 * 16 15 14 29 29 H 1.09001 * 109.57716 * 302.97908 * 18 12 2 30 30 H 1.09001 * 109.57722 * 63.36094 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5767 -1.6383 -1.1339 6 6 1.7969 -0.1762 -2.4794 7 7 1.9285 -0.9268 -3.5513 8 14 1.2833 1.6119 -2.6487 9 1 1.0868 1.9367 -4.0844 10 1 0.0128 1.8338 -1.9127 11 1 2.3420 2.4866 -2.0836 12 6 2.0400 -0.7213 1.2493 13 1 1.6758 -1.7486 1.2480 14 6 1.5263 -0.0033 2.4938 15 6 1.7875 -0.8372 3.7446 16 6 3.2865 -0.8572 4.0556 17 16 4.1598 -1.6673 2.6829 18 6 3.5709 -0.7245 1.2449 19 1 -0.3634 0.6196 0.8199 20 1 -0.3634 0.4003 -0.9465 21 1 -0.3634 -1.0198 0.1267 22 1 2.2616 -1.8342 -3.4700 23 1 2.0340 0.9564 2.5897 24 1 0.4543 0.1662 2.3936 25 1 1.2489 -0.4039 4.5874 26 1 1.4401 -1.8569 3.5789 27 1 3.6499 0.1642 4.1676 28 1 3.4608 -1.4121 4.9775 29 1 3.9326 -1.1929 0.3295 30 1 3.9385 0.3000 1.3029 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259616420.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:52 Heat of formation + Delta-G solvation = -47.369106 kcal Electronic energy + Delta-G solvation = -11443.081199 eV Core-core repulsion = 9555.567360 eV Total energy + Delta-G solvation = -1887.513838 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.03664 -35.51283 -33.54344 -30.93333 -28.30480 -26.35303 -24.24193 -22.23027 -20.60628 -19.54106 -17.51252 -16.44365 -15.77954 -15.65735 -14.93938 -14.52399 -14.48357 -14.13035 -13.98107 -13.57057 -12.87830 -12.58235 -12.53958 -12.27333 -12.06501 -11.89494 -11.51636 -11.44334 -11.00648 -10.94587 -10.43627 -10.31079 -8.69050 -8.67855 -6.29933 0.88591 1.47277 1.54581 1.64627 1.73244 2.52478 3.12239 3.79144 3.87400 4.02131 4.12338 4.33101 4.40509 4.60495 4.69156 4.73758 4.80484 4.89627 5.02497 5.05619 5.13846 5.16539 5.30819 5.36773 5.54774 5.77992 6.07112 6.17466 6.63651 7.47699 8.69468 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.049784 B = 0.010997 C = 0.009905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.293020 B = 2545.533494 C = 2826.062920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.018 3.982 3 H 0.027 0.973 4 C -0.589 4.589 5 H 0.015 0.985 6 C -0.028 4.028 7 N -0.947 5.947 8 Si 1.084 2.916 9 H -0.297 1.297 10 H -0.239 1.239 11 H -0.265 1.265 12 C -0.062 4.062 13 H 0.047 0.953 14 C -0.126 4.126 15 C -0.115 4.115 16 C -0.064 4.064 17 S -0.335 6.335 18 C -0.046 4.046 19 H 0.064 0.936 20 H 0.039 0.961 21 H 0.034 0.966 22 H 0.248 0.752 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 4.808 15.670 16.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.003 4.003 3 H 0.045 0.955 4 C -0.627 4.627 5 H 0.033 0.967 6 C -0.224 4.224 7 N -0.584 5.584 8 Si 0.906 3.094 9 H -0.224 1.224 10 H -0.163 1.163 11 H -0.190 1.190 12 C -0.082 4.082 13 H 0.066 0.934 14 C -0.163 4.163 15 C -0.154 4.154 16 C -0.212 4.212 17 S -0.108 6.108 18 C -0.194 4.194 19 H 0.083 0.917 20 H 0.058 0.942 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.086 0.914 24 H 0.101 0.899 25 H 0.121 0.879 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.138 0.862 29 H 0.093 0.907 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.025 5.062 14.650 15.533 hybrid contribution 0.139 -0.969 0.217 1.002 sum -0.886 4.093 14.866 15.445 Atomic orbital electron populations 1.22179 0.97409 1.00167 1.00422 1.19047 0.93233 0.95509 0.92501 0.95514 1.22237 1.38586 1.08330 0.93569 0.96694 1.27227 0.94715 1.08335 0.92134 1.71001 1.44923 1.09656 1.32864 0.83592 0.78999 0.70919 0.75919 1.22353 1.16280 1.18993 1.21115 0.92164 0.99275 0.95686 0.93413 1.21703 1.02684 0.98883 0.93077 1.21703 0.94159 1.01117 0.98430 1.23524 0.97329 1.03565 0.96774 1.86791 1.64392 1.53159 1.06463 1.23344 0.99281 1.01088 0.95721 0.91735 0.94225 0.94632 0.94291 0.91361 0.89918 0.87950 0.91880 0.88832 0.86167 0.90695 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.77 8.30 71.98 0.60 -5.18 16 2 C 0.02 0.78 1.47 -11.54 -0.02 0.77 16 3 H 0.03 1.16 6.82 -2.39 -0.02 1.14 16 4 C -0.59 -32.87 7.94 25.60 0.20 -32.67 16 5 H 0.01 0.93 7.18 -2.91 -0.02 0.91 16 6 C -0.03 -1.59 5.30 84.65 0.45 -1.14 16 7 N -0.95 -60.31 13.70 21.45 0.29 -60.02 16 8 Si 1.08 49.53 26.26 68.60 1.80 51.33 16 9 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 10 H -0.24 -9.52 5.71 99.48 0.57 -8.95 16 11 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 12 C -0.06 -2.35 1.58 -10.90 -0.02 -2.37 16 13 H 0.05 2.00 8.05 -2.39 -0.02 1.98 16 14 C -0.13 -3.50 4.82 30.32 0.15 -3.36 16 15 C -0.12 -2.60 5.75 30.49 0.18 -2.42 16 16 C -0.06 -1.47 6.45 72.02 0.46 -1.00 16 17 S -0.34 -11.06 22.33 -56.49 -1.26 -12.33 16 18 C -0.05 -1.78 5.52 72.01 0.40 -1.38 16 19 H 0.06 2.06 6.57 -2.38 -0.02 2.05 16 20 H 0.04 1.68 4.80 -2.39 -0.01 1.67 16 21 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.25 16.14 8.73 -92.71 -0.81 15.33 16 23 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 24 H 0.08 2.16 6.01 -2.39 -0.01 2.14 16 25 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.06 1.57 8.05 -2.39 -0.02 1.55 16 27 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.07 3.44 6.63 -2.39 -0.02 3.42 16 30 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -64.63 240.98 4.16 -60.47 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.92 Total: 9.29 kcal Atomic # 6 Polarization: -51.15 SS G_CDS: 2.40 Total: -48.75 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.29 Total: -60.02 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 1.80 Total: 51.33 kcal Atomic # 16 Polarization: -11.06 SS G_CDS: -1.26 Total: -12.33 kcal Total: -64.63 4.16 -60.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259616420.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.105 kcal (2) G-P(sol) polarization free energy of solvation -64.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds