Wall clock time and date at job start Mon Mar 30 2020 02:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00347 * 2 1 4 4 H 1.48494 * 109.47498 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47024 * 300.00327 * 3 2 1 6 6 H 1.48509 * 109.46745 * 60.00113 * 3 2 1 7 7 C 1.37879 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00428 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99886 * 359.97438 * 7 2 1 10 10 H 1.09003 * 108.69433 * 303.02343 * 9 7 2 11 11 C 1.53846 * 108.85415 * 61.45603 * 9 7 2 12 12 S 1.83618 * 105.00344 * 123.07737 * 11 9 7 13 13 C 1.82670 * 95.61177 * 18.89830 * 12 11 9 14 14 C 1.52062 * 116.01692 * 196.50526 * 13 12 11 15 15 O 1.44593 * 84.78940 * 220.41929 * 14 13 12 16 16 C 1.44587 * 93.76856 * 22.73381 * 15 14 13 17 17 C 1.53264 * 102.67292 * 325.96139 * 13 12 11 18 18 H 0.96995 * 119.99726 * 359.97438 * 1 2 3 19 19 H 1.09001 * 110.33091 * 241.96175 * 11 9 7 20 20 H 1.09002 * 110.33513 * 4.08688 * 11 9 7 21 21 H 1.09003 * 113.97897 * 334.37748 * 14 13 12 22 22 H 1.08999 * 113.98108 * 106.45575 * 14 13 12 23 23 H 1.09000 * 113.98390 * 223.31020 * 16 15 14 24 24 H 1.09008 * 113.97833 * 91.22250 * 16 15 14 25 25 H 1.08997 * 109.61305 * 279.59665 * 17 13 12 26 26 H 1.08997 * 109.60967 * 159.43736 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5893 -2.5206 0.8654 11 6 0.3994 -2.5816 -1.2792 12 16 0.9381 -4.1278 -2.1102 13 6 1.6995 -4.8723 -0.6261 14 6 2.6490 -6.0337 -0.8749 15 8 2.0274 -6.6199 0.2916 16 6 0.8223 -5.8313 0.1635 17 6 2.2557 -3.6514 0.1149 18 1 -0.4849 0.8400 0.0004 19 1 -0.6594 -2.6366 -1.0261 20 1 0.5911 -1.7196 -1.9182 21 1 2.4534 -6.5754 -1.8004 22 1 3.7009 -5.7832 -0.7377 23 1 0.4572 -5.4237 1.1062 24 1 0.0419 -6.3082 -0.4296 25 1 3.2054 -3.3546 -0.3301 26 1 2.4086 -3.8994 1.1652 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259632904.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:35 Heat of formation + Delta-G solvation = -20.540797 kcal Electronic energy + Delta-G solvation = -11131.976764 eV Core-core repulsion = 9109.793194 eV Total energy + Delta-G solvation = -2022.183570 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.061 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.15173 -35.26758 -32.03321 -29.19268 -26.51146 -25.66304 -24.95331 -20.69373 -18.73448 -16.88642 -16.57701 -15.59838 -15.55019 -14.62369 -13.82093 -13.72928 -13.01058 -12.63785 -11.88599 -11.67931 -11.64081 -11.08751 -10.81000 -10.63780 -10.24467 -10.00403 -9.88092 -9.37781 -9.20714 -8.99154 -8.49232 -7.02667 -6.19364 -4.23800 2.56535 3.19272 3.26975 3.30840 3.34295 3.88058 4.30993 4.58077 5.09869 5.19831 5.41338 5.50397 5.76358 6.06053 6.12038 6.20468 6.28364 6.38093 6.50381 6.62224 6.82740 7.36074 7.54681 7.76124 8.17039 8.78604 9.41529 10.89799 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.061091 B = 0.010489 C = 0.009967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.219330 B = 2668.851865 C = 2808.664618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.037 3.963 10 H 0.039 0.961 11 C -0.003 4.003 12 S -0.361 6.361 13 C -0.074 4.074 14 C 0.067 3.933 15 O -0.382 6.382 16 C 0.058 3.942 17 C -0.089 4.089 18 H 0.263 0.737 19 H 0.068 0.932 20 H 0.095 0.905 21 H 0.084 0.916 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.953 -7.169 -0.753 7.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.079 0.921 9 C 0.017 3.983 10 H 0.057 0.943 11 C -0.151 4.151 12 S -0.133 6.133 13 C -0.184 4.184 14 C -0.011 4.011 15 O -0.301 6.301 16 C -0.021 4.021 17 C -0.128 4.128 18 H 0.073 0.927 19 H 0.086 0.914 20 H 0.114 0.886 21 H 0.102 0.898 22 H 0.115 0.885 23 H 0.115 0.885 24 H 0.106 0.894 25 H 0.093 0.907 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.749 -7.598 -1.744 7.989 hybrid contribution 0.337 1.611 0.911 1.881 sum 2.087 -5.987 -0.833 6.395 Atomic orbital electron populations 1.69946 1.05952 1.26973 1.49816 1.25021 0.94954 0.99457 0.94729 0.86460 0.80167 0.83316 0.77695 1.19626 1.20881 1.20902 1.21218 0.93009 0.89651 1.51402 0.92071 1.19266 0.92824 0.93073 0.93113 0.94333 1.24314 1.01027 0.90767 0.98949 1.87228 1.76323 1.27634 1.22134 1.25803 0.98097 0.98460 0.96051 1.23612 0.98292 0.89828 0.89401 1.89722 1.30364 1.64883 1.45151 1.24006 0.88932 0.88773 1.00364 1.22084 1.00884 0.90834 0.98966 0.92696 0.91368 0.88640 0.89818 0.88494 0.88549 0.89411 0.90747 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.36 12.35 55.43 0.68 -23.67 15 2 C 0.06 1.61 5.06 -17.82 -0.09 1.52 15 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 15 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.51 -13.43 8.21 -34.44 -0.28 -13.71 15 8 H 0.06 1.59 7.47 -52.49 -0.39 1.20 15 9 C 0.04 0.88 2.57 -91.17 -0.23 0.65 15 10 H 0.04 0.98 8.14 -51.93 -0.42 0.56 15 11 C 0.00 -0.07 5.99 37.60 0.23 0.16 15 12 S -0.36 -7.30 22.70 -107.50 -2.44 -9.74 15 13 C -0.07 -1.33 1.18 -91.43 -0.11 -1.44 15 14 C 0.07 1.04 8.67 36.68 0.32 1.36 15 15 O -0.38 -6.43 12.46 -35.23 -0.44 -6.87 15 16 C 0.06 0.95 8.64 36.68 0.32 1.26 15 17 C -0.09 -1.79 5.25 -26.43 -0.14 -1.93 15 18 H 0.26 6.89 8.31 -40.82 -0.34 6.55 15 19 H 0.07 1.59 8.14 -51.93 -0.42 1.17 15 20 H 0.10 2.43 7.25 -51.93 -0.38 2.06 15 21 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 22 H 0.10 1.36 8.13 -51.93 -0.42 0.94 15 23 H 0.10 1.50 8.13 -51.93 -0.42 1.08 15 24 H 0.09 1.32 8.14 -51.92 -0.42 0.90 15 25 H 0.07 1.52 7.60 -51.93 -0.39 1.12 15 26 H 0.07 1.28 8.11 -51.93 -0.42 0.86 15 LS Contribution 231.50 15.07 3.49 3.49 Total: -1.00 -27.12 231.50 -6.98 -34.09 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -3.25 Total: -0.73 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 0.01 Total: -12.13 kcal Atomic # 7 Polarization: -24.36 SS G_CDS: 0.68 Total: -23.67 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.44 Total: -6.87 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -7.30 SS G_CDS: -2.44 Total: -9.74 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -27.12 -6.98 -34.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259632904.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.551 kcal (2) G-P(sol) polarization free energy of solvation -27.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds