Wall clock time and date at job start Mon Mar 30 2020 02:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00347 * 2 1 4 4 H 1.48494 * 109.47498 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47024 * 300.00327 * 3 2 1 6 6 H 1.48509 * 109.46745 * 60.00113 * 3 2 1 7 7 C 1.37879 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00428 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99886 * 359.97438 * 7 2 1 10 10 H 1.09003 * 108.69433 * 303.02343 * 9 7 2 11 11 C 1.53846 * 108.85415 * 61.45603 * 9 7 2 12 12 S 1.83618 * 105.00344 * 123.07737 * 11 9 7 13 13 C 1.82670 * 95.61177 * 18.89830 * 12 11 9 14 14 C 1.52062 * 116.01692 * 196.50526 * 13 12 11 15 15 O 1.44593 * 84.78940 * 220.41929 * 14 13 12 16 16 C 1.44587 * 93.76856 * 22.73381 * 15 14 13 17 17 C 1.53264 * 102.67292 * 325.96139 * 13 12 11 18 18 H 0.96995 * 119.99726 * 359.97438 * 1 2 3 19 19 H 1.09001 * 110.33091 * 241.96175 * 11 9 7 20 20 H 1.09002 * 110.33513 * 4.08688 * 11 9 7 21 21 H 1.09003 * 113.97897 * 334.37748 * 14 13 12 22 22 H 1.08999 * 113.98108 * 106.45575 * 14 13 12 23 23 H 1.09000 * 113.98390 * 223.31020 * 16 15 14 24 24 H 1.09008 * 113.97833 * 91.22250 * 16 15 14 25 25 H 1.08997 * 109.61305 * 279.59665 * 17 13 12 26 26 H 1.08997 * 109.60967 * 159.43736 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5893 -2.5206 0.8654 11 6 0.3994 -2.5816 -1.2792 12 16 0.9381 -4.1278 -2.1102 13 6 1.6995 -4.8723 -0.6261 14 6 2.6490 -6.0337 -0.8749 15 8 2.0274 -6.6199 0.2916 16 6 0.8223 -5.8313 0.1635 17 6 2.2557 -3.6514 0.1149 18 1 -0.4849 0.8400 0.0004 19 1 -0.6594 -2.6366 -1.0261 20 1 0.5911 -1.7196 -1.9182 21 1 2.4534 -6.5754 -1.8004 22 1 3.7009 -5.7832 -0.7377 23 1 0.4572 -5.4237 1.1062 24 1 0.0419 -6.3082 -0.4296 25 1 3.2054 -3.3546 -0.3301 26 1 2.4086 -3.8994 1.1652 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259632904.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:34 Heat of formation + Delta-G solvation = -36.736718 kcal Electronic energy + Delta-G solvation = -11132.679072 eV Core-core repulsion = 9109.793194 eV Total energy + Delta-G solvation = -2022.885878 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.061 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.49270 -37.08423 -33.91638 -30.80279 -27.86264 -27.41158 -26.72478 -22.42911 -20.28672 -18.55292 -18.29997 -16.97629 -16.92303 -16.46885 -15.53610 -15.37177 -14.73008 -14.15846 -13.55771 -13.51934 -13.08978 -12.91292 -12.51929 -12.39694 -11.93065 -11.70264 -11.57638 -11.08956 -10.83036 -10.69214 -10.42117 -8.67137 -8.21775 -6.32438 1.02242 1.37969 1.42465 1.50034 1.53036 2.38978 2.58443 3.10322 3.20592 3.70072 4.12330 4.30177 4.39861 4.52953 4.54362 4.63278 4.76612 4.88496 4.94369 5.01595 5.05834 5.47707 5.61750 5.73808 6.18560 6.75820 7.36115 8.87070 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.061091 B = 0.010489 C = 0.009967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.219330 B = 2668.851865 C = 2808.664618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.036 3.964 10 H 0.012 0.988 11 C 0.001 3.999 12 S -0.348 6.348 13 C -0.077 4.077 14 C 0.076 3.924 15 O -0.389 6.389 16 C 0.062 3.938 17 C -0.082 4.082 18 H 0.264 0.736 19 H 0.056 0.944 20 H 0.065 0.935 21 H 0.102 0.898 22 H 0.116 0.884 23 H 0.100 0.900 24 H 0.104 0.896 25 H 0.071 0.929 26 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.951 -8.080 -0.879 8.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.569 4.569 8 H 0.077 0.923 9 C 0.016 3.984 10 H 0.030 0.970 11 C -0.148 4.148 12 S -0.120 6.120 13 C -0.187 4.187 14 C -0.002 4.002 15 O -0.309 6.309 16 C -0.016 4.016 17 C -0.121 4.121 18 H 0.073 0.927 19 H 0.074 0.926 20 H 0.084 0.916 21 H 0.120 0.880 22 H 0.134 0.866 23 H 0.119 0.881 24 H 0.122 0.878 25 H 0.090 0.910 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.757 -8.523 -1.869 9.151 hybrid contribution 0.029 1.849 0.954 2.081 sum 2.786 -6.674 -0.914 7.290 Atomic orbital electron populations 1.70051 1.07201 1.27666 1.50622 1.25755 0.95699 1.02584 0.94481 0.85515 0.79181 0.79493 0.77592 1.18975 1.20756 1.20554 1.21544 0.93142 0.91000 1.51203 0.92258 1.19238 0.93010 0.93924 0.92246 0.96956 1.23893 1.00314 0.91872 0.98695 1.87095 1.76482 1.25335 1.23096 1.26077 0.99574 0.98339 0.94734 1.23783 0.98702 0.87888 0.89802 1.89731 1.30545 1.64842 1.45732 1.24090 0.89091 0.87949 1.00496 1.21903 0.99625 0.90630 0.99923 0.92695 0.92552 0.91608 0.88044 0.86618 0.88140 0.87833 0.90990 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.14 12.35 21.45 0.26 -50.88 15 2 C 0.01 0.78 5.06 84.66 0.43 1.21 15 3 Si 0.96 42.27 29.54 68.60 2.03 44.30 15 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 15 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 7 C -0.53 -27.92 8.21 25.60 0.21 -27.71 15 8 H 0.06 3.07 7.47 -2.91 -0.02 3.05 15 9 C 0.04 1.72 2.57 -11.15 -0.03 1.69 15 10 H 0.01 0.64 8.14 -2.39 -0.02 0.62 15 11 C 0.00 0.03 5.99 72.27 0.43 0.46 15 12 S -0.35 -13.61 22.70 -56.49 -1.28 -14.90 15 13 C -0.08 -2.62 1.18 -11.32 -0.01 -2.63 15 14 C 0.08 2.09 8.67 71.67 0.62 2.72 15 15 O -0.39 -11.84 12.46 -148.98 -1.86 -13.69 15 16 C 0.06 1.87 8.64 71.67 0.62 2.49 15 17 C -0.08 -3.21 5.25 30.79 0.16 -3.05 15 18 H 0.26 14.02 8.31 -92.71 -0.77 13.25 15 19 H 0.06 2.71 8.14 -2.39 -0.02 2.69 15 20 H 0.07 3.45 7.25 -2.39 -0.02 3.43 15 21 H 0.10 2.49 8.14 -2.39 -0.02 2.47 15 22 H 0.12 2.79 8.13 -2.39 -0.02 2.77 15 23 H 0.10 2.94 8.13 -2.39 -0.02 2.92 15 24 H 0.10 2.81 8.14 -2.38 -0.02 2.79 15 25 H 0.07 2.83 7.60 -2.39 -0.02 2.82 15 26 H 0.08 2.79 8.11 -2.39 -0.02 2.78 15 Total: -1.00 -56.84 231.50 2.74 -54.10 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 1.16 Total: 5.88 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 2.43 Total: -24.82 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.26 Total: -50.88 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -1.86 Total: -13.69 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: -13.61 SS G_CDS: -1.28 Total: -14.90 kcal Total: -56.84 2.74 -54.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259632904.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.363 kcal (2) G-P(sol) polarization free energy of solvation -56.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds