Wall clock time and date at job start Mon Mar 30 2020 02:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99979 * 2 1 4 4 H 1.48498 * 109.47154 * 270.00225 * 3 2 1 5 5 H 1.48497 * 109.47551 * 30.00120 * 3 2 1 6 6 H 1.48499 * 109.47060 * 150.00055 * 3 2 1 7 7 C 1.37879 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99693 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00061 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.88146 * 59.59767 * 9 7 2 11 11 C 1.55250 * 109.89692 * 298.54820 * 9 7 2 12 12 S 1.83711 * 102.25216 * 199.08635 * 11 9 7 13 13 C 1.82049 * 97.04466 * 22.78484 * 12 11 9 14 14 C 1.51777 * 116.20514 * 134.21995 * 13 12 11 15 15 O 1.43657 * 88.10408 * 90.48693 * 14 13 12 16 16 C 1.43655 * 88.78184 * 26.63169 * 15 14 13 17 17 C 1.52781 * 105.92909 * 1.80354 * 13 12 11 18 18 H 0.97005 * 119.99950 * 359.97438 * 1 2 3 19 19 H 1.09004 * 110.84496 * 80.90001 * 11 9 7 20 20 H 1.08999 * 111.02292 * 317.35949 * 11 9 7 21 21 H 1.09002 * 113.45909 * 335.66174 * 14 13 12 22 22 H 1.09004 * 113.45591 * 205.30771 * 14 13 12 23 23 H 1.09001 * 113.46087 * 88.13166 * 16 15 14 24 24 H 1.08998 * 113.45792 * 218.48656 * 16 15 14 25 25 H 1.09002 * 109.64483 * 92.97898 * 17 13 12 26 26 H 1.09006 * 109.64396 * 213.27362 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 1 3.8825 -0.6755 0.8829 11 6 4.0393 -0.4961 -1.2835 12 16 5.7673 -1.1125 -1.3797 13 6 5.5227 -2.6186 -0.3867 14 6 6.1259 -3.8946 -0.9448 15 8 7.3234 -3.5930 -0.2108 16 6 6.5250 -2.8567 0.7294 17 6 4.0398 -2.6428 -0.0200 18 1 -0.4850 0.8401 0.0004 19 1 4.0199 0.5880 -1.1711 20 1 3.4683 -0.8039 -2.1594 21 1 6.2627 -3.8732 -2.0260 22 1 5.6228 -4.7987 -0.6017 23 1 6.1325 -3.4706 1.5400 24 1 7.0046 -1.9451 1.0857 25 1 3.4888 -3.2243 -0.7592 26 1 3.9132 -3.0920 0.9651 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259632909.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:39 Heat of formation + Delta-G solvation = -31.231690 kcal Electronic energy + Delta-G solvation = -11154.101000 eV Core-core repulsion = 9131.453838 eV Total energy + Delta-G solvation = -2022.647162 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.061 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.77072 -37.26171 -34.23177 -31.46118 -27.45167 -27.37828 -26.68910 -22.13429 -21.24572 -18.98966 -17.86994 -17.08716 -16.78653 -16.45944 -15.95277 -15.78224 -14.81497 -14.11036 -13.88007 -13.65756 -13.15709 -12.99998 -12.64669 -12.45511 -11.96312 -11.58973 -11.39514 -11.32967 -10.99246 -10.84961 -10.58551 -8.80246 -8.36756 -6.41716 0.78075 1.27096 1.31100 1.35992 1.44184 2.26173 2.85974 2.97751 3.05134 3.81403 4.03078 4.19313 4.23129 4.31640 4.52757 4.55768 4.63651 4.72835 4.77451 4.92840 4.97068 5.18806 5.41388 5.51055 6.19796 6.64636 7.23865 8.79134 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.060088 B = 0.011816 C = 0.010802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.871538 B = 2369.083088 C = 2591.486749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.025 3.975 3 Si 0.927 3.073 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.246 1.246 7 C -0.513 4.513 8 H 0.047 0.953 9 C 0.012 3.988 10 H 0.041 0.959 11 C -0.071 4.071 12 S -0.284 6.284 13 C -0.093 4.093 14 C 0.059 3.941 15 O -0.387 6.387 16 C 0.055 3.945 17 C -0.093 4.093 18 H 0.268 0.732 19 H 0.076 0.924 20 H 0.084 0.916 21 H 0.096 0.904 22 H 0.118 0.882 23 H 0.117 0.883 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.849 -4.387 0.177 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.175 4.175 3 Si 0.753 3.247 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.170 1.170 7 C -0.552 4.552 8 H 0.066 0.934 9 C -0.008 4.008 10 H 0.059 0.941 11 C -0.219 4.219 12 S -0.053 6.053 13 C -0.204 4.204 14 C -0.020 4.020 15 O -0.306 6.306 16 C -0.023 4.023 17 C -0.131 4.131 18 H 0.078 0.922 19 H 0.094 0.906 20 H 0.103 0.897 21 H 0.114 0.886 22 H 0.135 0.865 23 H 0.135 0.865 24 H 0.111 0.889 25 H 0.092 0.908 26 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.980 -3.864 -0.432 12.595 hybrid contribution -1.436 0.652 0.379 1.622 sum 10.544 -3.213 -0.054 11.022 Atomic orbital electron populations 1.70002 1.07997 1.28226 1.51631 1.25745 0.95293 1.02459 0.93955 0.86140 0.79604 0.79771 0.79225 1.19179 1.21710 1.16985 1.21103 0.89970 0.93514 1.50649 0.93448 1.20182 0.94948 0.93406 0.92300 0.94117 1.24986 0.91312 1.01866 1.03748 1.86949 1.18714 1.29451 1.70225 1.25128 0.99505 0.96041 0.99709 1.23764 0.83477 0.95584 0.99141 1.89871 1.25964 1.73198 1.41559 1.23864 0.88709 0.97172 0.92595 1.21895 0.90265 0.97654 1.03288 0.92248 0.90574 0.89740 0.88591 0.86457 0.86511 0.88890 0.90849 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.94 13.96 21.45 0.30 -55.65 15 2 C 0.02 1.35 5.45 84.66 0.46 1.81 15 3 Si 0.93 42.36 24.35 68.60 1.67 44.03 15 4 H -0.27 -11.73 7.06 99.48 0.70 -11.03 15 5 H -0.29 -13.25 7.11 99.48 0.71 -12.55 15 6 H -0.25 -10.55 6.47 99.48 0.64 -9.91 15 7 C -0.51 -27.10 9.12 25.60 0.23 -26.87 15 8 H 0.05 2.74 8.00 -2.91 -0.02 2.72 15 9 C 0.01 0.51 2.06 -10.36 -0.02 0.49 15 10 H 0.04 1.78 7.19 -2.39 -0.02 1.77 15 11 C -0.07 -2.92 5.70 72.75 0.41 -2.51 15 12 S -0.28 -10.24 22.72 -56.49 -1.28 -11.52 15 13 C -0.09 -2.86 1.45 -11.63 -0.02 -2.87 15 14 C 0.06 1.51 8.17 64.83 0.53 2.04 15 15 O -0.39 -11.29 12.74 -148.98 -1.90 -13.18 15 16 C 0.06 1.46 8.14 64.87 0.53 1.99 15 17 C -0.09 -3.18 5.23 30.93 0.16 -3.02 15 18 H 0.27 15.02 8.31 -92.70 -0.77 14.25 15 19 H 0.08 3.19 4.60 -2.38 -0.01 3.18 15 20 H 0.08 3.55 8.10 -2.39 -0.02 3.53 15 21 H 0.10 2.42 8.14 -2.39 -0.02 2.40 15 22 H 0.12 2.35 8.14 -2.38 -0.02 2.33 15 23 H 0.12 2.44 8.02 -2.39 -0.02 2.42 15 24 H 0.09 2.47 8.14 -2.39 -0.02 2.45 15 25 H 0.07 2.57 8.08 -2.39 -0.02 2.55 15 26 H 0.09 2.86 7.91 -2.38 -0.02 2.84 15 Total: -1.00 -60.49 224.35 2.18 -58.31 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.10 Total: 6.95 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 2.29 Total: -28.94 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.30 Total: -55.65 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -1.90 Total: -13.18 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.67 Total: 44.03 kcal Atomic # 16 Polarization: -10.24 SS G_CDS: -1.28 Total: -11.52 kcal Total: -60.49 2.18 -58.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259632909.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.081 kcal (2) G-P(sol) polarization free energy of solvation -60.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds