Wall clock time and date at job start Mon Mar 30 2020 02:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.69623 * 2 1 4 4 S 1.83990 * 110.78286 * 236.70224 * 2 1 3 5 5 C 1.84053 * 94.49099 * 207.58663 * 4 2 1 6 6 C 1.54367 * 102.13317 * 33.69975 * 5 4 2 7 7 H 1.08995 * 108.82649 * 96.85257 * 6 5 4 8 8 C 1.52999 * 108.82174 * 215.09686 * 6 5 4 9 9 C 1.50696 * 109.47036 * 184.99787 * 8 6 5 10 10 H 1.07996 * 120.00102 * 0.02562 * 9 8 6 11 11 C 1.37880 * 120.00101 * 179.97438 * 9 8 6 12 12 N 1.31507 * 120.00189 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99867 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46588 * 90.00082 * 13 11 9 15 15 H 1.48502 * 109.47289 * 209.99874 * 13 11 9 16 16 H 1.48496 * 109.47120 * 330.00482 * 13 11 9 17 17 C 1.49907 * 112.80908 * 335.97103 * 6 5 4 18 18 O 1.20754 * 123.26922 * 179.62689 * 17 6 5 19 19 H 1.09002 * 109.47153 * 181.84401 * 1 2 3 20 20 H 1.09001 * 109.46832 * 61.84592 * 1 2 3 21 21 H 1.09004 * 109.47261 * 301.84574 * 1 2 3 22 22 H 1.08999 * 110.87287 * 151.85908 * 5 4 2 23 23 H 1.08996 * 110.86790 * 275.53932 * 5 4 2 24 24 H 1.08998 * 109.47341 * 305.00254 * 8 6 5 25 25 H 1.09003 * 109.47472 * 64.99819 * 8 6 5 26 26 H 0.97000 * 120.00383 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9152 1.0197 0.0000 4 16 2.1828 -0.9444 -1.4378 5 6 3.7544 -1.4118 -0.6016 6 6 3.3062 -1.5686 0.8672 7 1 3.1145 -2.6230 1.0658 8 6 4.4382 -1.0964 1.7818 9 6 4.0651 -1.3569 3.2184 10 1 3.1158 -1.8140 3.4554 11 6 4.9362 -1.0127 4.2303 12 7 4.6108 -1.2405 5.4839 13 14 6.5791 -0.2240 3.8202 14 1 6.4249 1.2527 3.7879 15 1 7.5781 -0.5948 4.8546 16 1 7.0403 -0.7027 2.4924 17 6 2.0689 -0.7839 1.1842 18 8 1.5509 -0.7758 2.2750 19 1 -0.3633 -1.0271 0.0331 20 1 -0.3633 0.4849 -0.9061 21 1 -0.3634 0.5422 0.8730 22 1 4.1375 -2.3540 -0.9934 23 1 4.4964 -0.6193 -0.6987 24 1 5.3517 -1.6393 1.5394 25 1 4.6011 -0.0284 1.6367 26 1 5.2238 -0.9987 6.1957 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259711142.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:37 Heat of formation + Delta-G solvation = -46.756950 kcal Electronic energy + Delta-G solvation = -11023.718560 eV Core-core repulsion = 9000.398172 eV Total energy + Delta-G solvation = -2023.320388 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.061 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.20261 -34.74491 -32.89842 -31.97433 -28.27433 -25.10563 -23.47726 -21.30666 -18.56211 -16.91317 -16.36531 -15.81144 -15.12041 -14.39200 -13.98097 -13.29213 -12.93497 -12.90951 -12.39468 -12.29212 -11.89561 -11.62476 -11.23678 -11.07293 -10.68683 -10.42388 -9.98670 -9.55208 -9.41654 -8.72555 -8.53401 -7.65216 -6.03940 -4.03480 1.83889 2.28564 2.62920 3.26312 3.34201 3.34668 4.27425 4.41126 4.88828 5.04421 5.17338 5.25428 5.28819 5.53946 5.71053 5.83088 5.96398 6.12372 6.16199 6.38625 6.93638 7.05422 7.66371 8.00563 8.50482 9.09862 9.55337 11.09054 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.049881 B = 0.011239 C = 0.009845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.200197 B = 2490.714156 C = 2843.303797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.100 4.100 3 H 0.121 0.879 4 S -0.295 6.295 5 C -0.055 4.055 6 C -0.140 4.140 7 H 0.109 0.891 8 C 0.002 3.998 9 C -0.525 4.525 10 H 0.089 0.911 11 C 0.070 3.930 12 N -0.897 5.897 13 Si 0.872 3.128 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.266 1.266 17 C 0.378 3.622 18 O -0.395 6.395 19 H 0.066 0.934 20 H 0.065 0.935 21 H 0.076 0.924 22 H 0.108 0.892 23 H 0.095 0.905 24 H 0.032 0.968 25 H 0.014 0.986 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 1.890 -12.507 12.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.229 4.229 3 H 0.138 0.862 4 S -0.068 6.068 5 C -0.203 4.203 6 C -0.160 4.160 7 H 0.127 0.873 8 C -0.037 4.037 9 C -0.563 4.563 10 H 0.107 0.893 11 C -0.131 4.131 12 N -0.536 5.536 13 Si 0.699 3.301 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.190 1.190 17 C 0.246 3.754 18 O -0.263 6.263 19 H 0.085 0.915 20 H 0.084 0.916 21 H 0.095 0.905 22 H 0.126 0.874 23 H 0.113 0.887 24 H 0.050 0.950 25 H 0.033 0.967 26 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.647 1.666 -12.860 13.470 hybrid contribution 1.522 0.750 0.867 1.906 sum -2.125 2.417 -11.992 12.416 Atomic orbital electron populations 1.21509 0.90496 1.03467 1.02751 1.24527 1.00884 1.02559 0.94940 0.86160 1.87823 1.24557 1.69397 1.25062 1.24282 0.95127 1.05252 0.95626 1.21958 0.97247 1.03046 0.93702 0.87276 1.19610 0.92420 0.96097 0.95573 1.21246 1.05771 1.41285 0.87971 0.89287 1.24987 0.97883 0.95314 0.94961 1.69905 1.36683 1.47954 0.99037 0.86908 0.84564 0.80072 0.78509 1.20339 1.21209 1.19034 1.24345 0.84392 0.79202 0.87459 1.90467 1.56601 1.55418 1.23802 0.91467 0.91605 0.90475 0.87379 0.88662 0.95005 0.96733 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 9.15 37.16 0.34 -1.29 15 2 C -0.10 -1.52 3.87 -27.29 -0.11 -1.63 15 3 H 0.12 1.70 8.14 -51.93 -0.42 1.27 15 4 S -0.30 -4.32 22.77 -107.50 -2.45 -6.77 15 5 C -0.06 -0.81 6.97 37.87 0.26 -0.54 15 6 C -0.14 -2.61 2.58 -91.44 -0.24 -2.85 15 7 H 0.11 2.07 8.14 -51.93 -0.42 1.65 15 8 C 0.00 0.03 3.32 -27.89 -0.09 -0.06 15 9 C -0.52 -14.78 8.63 -34.44 -0.30 -15.08 15 10 H 0.09 2.78 6.57 -52.49 -0.34 2.43 15 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 15 12 N -0.90 -27.88 13.96 55.43 0.77 -27.10 15 13 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 15 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 16 H -0.27 -6.06 6.54 56.52 0.37 -5.69 15 17 C 0.38 7.33 6.17 -28.82 -0.18 7.15 15 18 O -0.40 -9.26 15.24 6.00 0.09 -9.17 15 19 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.11 1.37 8.14 -51.93 -0.42 0.95 15 23 H 0.09 1.32 7.86 -51.93 -0.41 0.91 15 24 H 0.03 0.70 7.20 -51.93 -0.37 0.32 15 25 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 15 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 LS Contribution 232.70 15.07 3.51 3.51 Total: -1.00 -31.35 232.70 -6.37 -37.72 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -3.22 Total: -2.38 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -0.40 Total: -12.36 kcal Atomic # 7 Polarization: -27.88 SS G_CDS: 0.77 Total: -27.10 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Atomic # 16 Polarization: -4.32 SS G_CDS: -2.45 Total: -6.77 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -31.35 -6.37 -37.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259711142.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.038 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds