Wall clock time and date at job start Mon Mar 30 2020 02:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.69623 * 2 1 4 4 S 1.83990 * 110.78286 * 236.70224 * 2 1 3 5 5 C 1.84053 * 94.49099 * 207.58663 * 4 2 1 6 6 C 1.54367 * 102.13317 * 33.69975 * 5 4 2 7 7 H 1.08995 * 108.82649 * 96.85257 * 6 5 4 8 8 C 1.52999 * 108.82174 * 215.09686 * 6 5 4 9 9 C 1.50696 * 109.47036 * 184.99787 * 8 6 5 10 10 H 1.07996 * 120.00102 * 0.02562 * 9 8 6 11 11 C 1.37880 * 120.00101 * 179.97438 * 9 8 6 12 12 N 1.31507 * 120.00189 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99867 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46588 * 90.00082 * 13 11 9 15 15 H 1.48502 * 109.47289 * 209.99874 * 13 11 9 16 16 H 1.48496 * 109.47120 * 330.00482 * 13 11 9 17 17 C 1.49907 * 112.80908 * 335.97103 * 6 5 4 18 18 O 1.20754 * 123.26922 * 179.62689 * 17 6 5 19 19 H 1.09002 * 109.47153 * 181.84401 * 1 2 3 20 20 H 1.09001 * 109.46832 * 61.84592 * 1 2 3 21 21 H 1.09004 * 109.47261 * 301.84574 * 1 2 3 22 22 H 1.08999 * 110.87287 * 151.85908 * 5 4 2 23 23 H 1.08996 * 110.86790 * 275.53932 * 5 4 2 24 24 H 1.08998 * 109.47341 * 305.00254 * 8 6 5 25 25 H 1.09003 * 109.47472 * 64.99819 * 8 6 5 26 26 H 0.97000 * 120.00383 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9152 1.0197 0.0000 4 16 2.1828 -0.9444 -1.4378 5 6 3.7544 -1.4118 -0.6016 6 6 3.3062 -1.5686 0.8672 7 1 3.1145 -2.6230 1.0658 8 6 4.4382 -1.0964 1.7818 9 6 4.0651 -1.3569 3.2184 10 1 3.1158 -1.8140 3.4554 11 6 4.9362 -1.0127 4.2303 12 7 4.6108 -1.2405 5.4839 13 14 6.5791 -0.2240 3.8202 14 1 6.4249 1.2527 3.7879 15 1 7.5781 -0.5948 4.8546 16 1 7.0403 -0.7027 2.4924 17 6 2.0689 -0.7839 1.1842 18 8 1.5509 -0.7758 2.2750 19 1 -0.3633 -1.0271 0.0331 20 1 -0.3633 0.4849 -0.9061 21 1 -0.3634 0.5422 0.8730 22 1 4.1375 -2.3540 -0.9934 23 1 4.4964 -0.6193 -0.6987 24 1 5.3517 -1.6393 1.5394 25 1 4.6011 -0.0284 1.6367 26 1 5.2238 -0.9987 6.1957 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259711142.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:37 Heat of formation + Delta-G solvation = -67.108997 kcal Electronic energy + Delta-G solvation = -11024.601091 eV Core-core repulsion = 9000.398172 eV Total energy + Delta-G solvation = -2024.202919 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.061 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.78690 -36.40891 -34.63684 -33.56883 -30.06231 -26.38125 -25.17133 -22.98530 -20.05088 -18.97279 -17.70698 -17.26864 -16.65096 -16.26181 -15.29163 -14.94022 -14.64027 -14.25368 -14.02178 -13.83257 -13.31203 -13.00959 -12.76893 -12.47385 -12.38553 -11.97560 -11.78509 -11.51264 -10.95033 -10.78070 -10.29917 -8.79285 -8.24578 -6.29839 0.59851 0.98769 1.23912 1.35895 1.38099 1.48710 2.36813 2.87665 3.09481 3.54577 3.83157 3.94994 4.03302 4.26506 4.65202 4.69838 4.73482 4.75749 4.81025 5.10375 5.18603 5.28867 5.60390 6.31125 6.48742 6.85008 7.32780 8.92498 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.049881 B = 0.011239 C = 0.009845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.200197 B = 2490.714156 C = 2843.303797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.097 4.097 3 H 0.138 0.862 4 S -0.272 6.272 5 C -0.047 4.047 6 C -0.142 4.142 7 H 0.099 0.901 8 C 0.003 3.997 9 C -0.530 4.530 10 H 0.040 0.960 11 C -0.001 4.001 12 N -0.955 5.955 13 Si 0.948 3.052 14 H -0.271 1.271 15 H -0.287 1.287 16 H -0.232 1.232 17 C 0.370 3.630 18 O -0.450 6.450 19 H 0.060 0.940 20 H 0.093 0.907 21 H 0.072 0.928 22 H 0.134 0.866 23 H 0.113 0.887 24 H 0.049 0.951 25 H 0.025 0.975 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.603 2.797 -15.463 15.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.226 4.226 3 H 0.156 0.844 4 S -0.045 6.045 5 C -0.195 4.195 6 C -0.162 4.162 7 H 0.117 0.883 8 C -0.035 4.035 9 C -0.568 4.568 10 H 0.058 0.942 11 C -0.197 4.197 12 N -0.596 5.596 13 Si 0.771 3.229 14 H -0.196 1.196 15 H -0.213 1.213 16 H -0.154 1.154 17 C 0.242 3.758 18 O -0.322 6.322 19 H 0.079 0.921 20 H 0.111 0.889 21 H 0.091 0.909 22 H 0.152 0.848 23 H 0.131 0.869 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.281 2.565 -15.873 16.239 hybrid contribution 0.987 0.403 1.793 2.086 sum -1.294 2.968 -14.080 14.447 Atomic orbital electron populations 1.21536 0.89107 1.03415 1.03956 1.24520 1.02152 1.02761 0.93207 0.84397 1.87813 1.24124 1.69112 1.23440 1.24267 0.95589 1.07424 0.92176 1.21935 0.95975 1.02247 0.96063 0.88338 1.19537 0.94401 0.96914 0.92656 1.21567 1.03803 1.40017 0.91436 0.94215 1.26072 1.02845 0.96236 0.94556 1.70100 1.38685 1.50259 1.00591 0.85701 0.78533 0.78969 0.79706 1.19650 1.21343 1.15445 1.25022 0.84162 0.78825 0.87745 1.90454 1.58128 1.57281 1.26292 0.92112 0.88868 0.90884 0.84831 0.86876 0.93264 0.95714 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 9.15 71.98 0.66 -2.34 15 2 C -0.10 -2.76 3.87 30.23 0.12 -2.64 15 3 H 0.14 3.48 8.14 -2.39 -0.02 3.46 15 4 S -0.27 -7.00 22.77 -56.49 -1.29 -8.29 15 5 C -0.05 -1.20 6.97 72.45 0.50 -0.69 15 6 C -0.14 -5.12 2.58 -11.32 -0.03 -5.15 15 7 H 0.10 3.73 8.14 -2.39 -0.02 3.71 15 8 C 0.00 0.15 3.32 29.85 0.10 0.25 15 9 C -0.53 -30.55 8.63 25.60 0.22 -30.33 15 10 H 0.04 2.63 6.57 -2.91 -0.02 2.61 15 11 C 0.00 -0.07 5.47 84.66 0.46 0.39 15 12 N -0.96 -61.61 13.96 21.45 0.30 -61.31 15 13 Si 0.95 43.22 27.47 68.60 1.88 45.11 15 14 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 15 H -0.29 -13.07 7.11 99.48 0.71 -12.36 15 16 H -0.23 -9.22 6.54 99.48 0.65 -8.57 15 17 C 0.37 14.30 6.17 29.24 0.18 14.48 15 18 O -0.45 -22.00 15.24 -1.43 -0.02 -22.02 15 19 H 0.06 1.56 8.14 -2.39 -0.02 1.54 15 20 H 0.09 1.79 8.14 -2.39 -0.02 1.77 15 21 H 0.07 1.86 8.14 -2.38 -0.02 1.84 15 22 H 0.13 2.77 8.14 -2.39 -0.02 2.75 15 23 H 0.11 2.56 7.86 -2.39 -0.02 2.54 15 24 H 0.05 1.99 7.20 -2.39 -0.02 1.97 15 25 H 0.02 1.03 7.57 -2.39 -0.02 1.01 15 26 H 0.26 15.85 8.31 -92.71 -0.77 15.08 15 Total: -1.00 -70.69 232.70 4.19 -66.50 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.10 Total: 6.06 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 2.21 Total: -26.03 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 0.30 Total: -61.31 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.02 Total: -22.02 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.11 kcal Atomic # 16 Polarization: -7.00 SS G_CDS: -1.29 Total: -8.29 kcal Total: -70.69 4.19 -66.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259711142.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.613 kcal (2) G-P(sol) polarization free energy of solvation -70.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds