Wall clock time and date at job start Mon Mar 30 2020 02:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.84234 * 2 1 4 4 S 1.83990 * 110.78276 * 123.40891 * 2 1 3 5 5 C 1.84056 * 94.48961 * 152.41107 * 4 2 1 6 6 C 1.54362 * 102.13631 * 326.30039 * 5 4 2 7 7 H 1.09001 * 108.82414 * 263.15064 * 6 5 4 8 8 C 1.52998 * 108.82549 * 144.90059 * 6 5 4 9 9 C 1.50701 * 109.46884 * 170.25223 * 8 6 5 10 10 H 1.07997 * 120.00184 * 0.02562 * 9 8 6 11 11 C 1.37880 * 119.99531 * 180.02562 * 9 8 6 12 12 N 1.31512 * 120.00323 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99668 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47071 * 60.00374 * 13 11 9 15 15 H 1.48502 * 109.46939 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47298 * 300.00099 * 13 11 9 17 17 C 1.49916 * 112.80613 * 24.02292 * 6 5 4 18 18 O 1.20761 * 123.26659 * 180.37005 * 17 6 5 19 19 H 1.08999 * 109.46915 * 183.39915 * 1 2 3 20 20 H 1.09008 * 109.47035 * 303.39450 * 1 2 3 21 21 H 1.08998 * 109.47315 * 63.39239 * 1 2 3 22 22 H 1.08998 * 110.86840 * 208.13645 * 5 4 2 23 23 H 1.08995 * 110.86605 * 84.46218 * 5 4 2 24 24 H 1.08991 * 109.47158 * 290.25504 * 8 6 5 25 25 H 1.08999 * 109.46641 * 50.25031 * 8 6 5 26 26 H 0.97003 * 120.00348 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9178 1.0187 0.0000 4 16 2.1828 -0.9471 1.4359 5 6 3.7544 -1.4130 0.5988 6 6 3.3063 -1.5670 -0.8703 7 1 3.1145 -2.6211 -1.0708 8 6 4.4382 -1.0929 -1.7840 9 6 4.1171 -1.4559 -3.2110 10 1 3.1976 -1.9725 -3.4430 11 6 4.9975 -1.1283 -4.2203 12 7 6.1175 -0.4996 -3.9377 13 14 4.5999 -1.5787 -5.9890 14 1 3.3304 -0.9230 -6.3935 15 1 5.6985 -1.1185 -6.8759 16 1 4.4546 -3.0521 -6.1039 17 6 2.0688 -0.7817 -1.1857 18 8 1.5508 -0.7715 -2.2766 19 1 -0.3633 -1.0259 0.0609 20 1 -0.3633 0.5657 0.8581 21 1 -0.3634 0.4603 -0.9188 22 1 4.1374 -2.3559 0.9889 23 1 4.4964 -0.6207 0.6974 24 1 4.5448 -0.0116 -1.6993 25 1 5.3701 -1.5742 -1.4875 26 1 6.7367 -0.2687 -4.6479 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259711147.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:41 Heat of formation + Delta-G solvation = -70.379565 kcal Electronic energy + Delta-G solvation = -10983.341583 eV Core-core repulsion = 8958.996842 eV Total energy + Delta-G solvation = -2024.344741 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.061 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.75470 -36.40093 -34.65146 -33.48537 -29.54886 -26.36779 -25.42173 -23.15691 -20.04757 -18.65189 -17.66589 -17.25393 -16.57679 -16.47012 -15.30019 -14.99956 -14.35971 -14.11752 -14.03855 -13.62633 -13.21986 -12.96191 -12.73795 -12.62981 -12.45588 -12.28230 -11.80010 -11.46518 -10.86961 -10.67472 -10.29237 -8.80541 -8.22859 -6.30189 0.59594 0.96588 1.22620 1.36607 1.39273 1.47392 2.39549 2.88507 3.11834 3.56997 3.84718 3.97665 4.04279 4.29019 4.67978 4.71426 4.76602 4.81613 4.87997 5.11749 5.39130 5.45754 5.76459 6.16203 6.45644 6.83031 7.37864 8.88083 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.054084 B = 0.010392 C = 0.009179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.592036 B = 2693.702517 C = 3049.721647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.097 4.097 3 H 0.134 0.866 4 S -0.271 6.271 5 C -0.047 4.047 6 C -0.147 4.147 7 H 0.102 0.898 8 C 0.045 3.955 9 C -0.533 4.533 10 H 0.057 0.943 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.953 3.047 14 H -0.278 1.278 15 H -0.279 1.279 16 H -0.266 1.266 17 C 0.377 3.623 18 O -0.450 6.450 19 H 0.065 0.935 20 H 0.092 0.908 21 H 0.074 0.926 22 H 0.130 0.870 23 H 0.101 0.899 24 H -0.002 1.002 25 H 0.022 0.978 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.259 -0.066 9.425 11.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.227 4.227 3 H 0.151 0.849 4 S -0.043 6.043 5 C -0.194 4.194 6 C -0.167 4.167 7 H 0.120 0.880 8 C 0.007 3.993 9 C -0.571 4.571 10 H 0.075 0.925 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.779 3.221 14 H -0.204 1.204 15 H -0.204 1.204 16 H -0.191 1.191 17 C 0.249 3.751 18 O -0.322 6.322 19 H 0.084 0.916 20 H 0.110 0.890 21 H 0.093 0.907 22 H 0.148 0.852 23 H 0.119 0.881 24 H 0.017 0.983 25 H 0.040 0.960 26 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.833 -0.240 9.918 12.640 hybrid contribution 0.721 0.156 -2.141 2.265 sum -7.112 -0.084 7.776 10.539 Atomic orbital electron populations 1.21549 0.88623 1.03748 1.03997 1.24511 1.02378 1.02552 0.93214 0.84863 1.87738 1.23772 1.68878 1.23961 1.24207 0.95544 1.06849 0.92838 1.22077 0.96292 1.02336 0.95990 0.88011 1.18935 0.92307 0.95261 0.92818 1.21595 1.04910 1.37363 0.93264 0.92510 1.25776 0.94927 0.95195 1.03304 1.70037 1.11029 1.41749 1.34189 0.85671 0.77607 0.79067 0.79769 1.20369 1.20407 1.19119 1.24935 0.83762 0.78540 0.87863 1.90380 1.58310 1.57397 1.26111 0.91612 0.88954 0.90704 0.85181 0.88074 0.98323 0.96011 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 9.17 71.98 0.66 -2.27 15 2 C -0.10 -2.85 3.87 30.23 0.12 -2.73 15 3 H 0.13 3.63 8.14 -2.39 -0.02 3.61 15 4 S -0.27 -7.48 22.77 -56.49 -1.29 -8.76 15 5 C -0.05 -1.38 6.94 72.44 0.50 -0.87 15 6 C -0.15 -5.65 2.54 -11.32 -0.03 -5.68 15 7 H 0.10 3.95 8.11 -2.39 -0.02 3.94 15 8 C 0.05 2.23 4.23 29.85 0.13 2.36 15 9 C -0.53 -30.24 8.08 25.60 0.21 -30.04 15 10 H 0.06 3.27 6.74 -2.91 -0.02 3.25 15 11 C 0.01 0.34 5.46 84.66 0.46 0.81 15 12 N -0.93 -55.61 13.29 21.45 0.28 -55.33 15 13 Si 0.95 45.58 29.54 68.60 2.03 47.61 15 14 H -0.28 -13.32 7.11 99.48 0.71 -12.61 15 15 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 17 C 0.38 14.61 6.18 29.24 0.18 14.79 15 18 O -0.45 -20.81 15.59 -1.45 -0.02 -20.83 15 19 H 0.06 1.61 8.14 -2.39 -0.02 1.59 15 20 H 0.09 1.76 8.14 -2.38 -0.02 1.74 15 21 H 0.07 1.86 8.07 -2.39 -0.02 1.84 15 22 H 0.13 3.24 8.14 -2.39 -0.02 3.22 15 23 H 0.10 2.93 7.86 -2.39 -0.02 2.91 15 24 H 0.00 -0.08 8.13 -2.39 -0.02 -0.10 15 25 H 0.02 1.11 8.11 -2.39 -0.02 1.09 15 26 H 0.26 14.94 8.31 -92.71 -0.77 14.17 15 Total: -1.00 -64.33 236.87 4.39 -59.94 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: 1.16 Total: 1.02 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 2.23 Total: -23.64 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.28 Total: -55.33 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.02 Total: -20.83 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: -7.48 SS G_CDS: -1.29 Total: -8.76 kcal Total: -64.33 4.39 -59.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259711147.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.441 kcal (2) G-P(sol) polarization free energy of solvation -64.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds