Wall clock time and date at job start Mon Mar 30 2020 03:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.48948 * 2 1 4 4 C 1.53096 * 109.48029 * 239.97453 * 2 1 3 5 5 C 1.53181 * 109.16217 * 297.62467 * 4 2 1 6 6 H 1.08997 * 109.54282 * 183.14845 * 5 4 2 7 7 O 1.42901 * 109.54078 * 62.88632 * 5 4 2 8 8 C 1.53172 * 109.03644 * 303.02305 * 5 4 2 9 9 H 1.09010 * 109.57558 * 297.04103 * 8 5 4 10 10 C 1.50706 * 109.52264 * 176.88864 * 8 5 4 11 11 H 1.07996 * 119.99680 * 0.30455 * 10 8 5 12 12 C 1.37879 * 120.00044 * 180.31536 * 10 8 5 13 13 N 1.31513 * 119.99919 * 359.97438 * 12 10 8 14 14 Si 1.86793 * 119.99907 * 179.72254 * 12 10 8 15 15 H 1.48496 * 109.47294 * 89.99388 * 14 12 10 16 16 H 1.48503 * 109.47019 * 209.99888 * 14 12 10 17 17 H 1.48504 * 109.46930 * 329.99621 * 14 12 10 18 18 C 1.53094 * 109.16631 * 56.97781 * 8 5 4 19 19 O 1.42900 * 109.41426 * 302.39184 * 18 8 5 20 20 H 1.08997 * 109.47363 * 309.26911 * 1 2 3 21 21 H 1.09003 * 109.47050 * 69.26334 * 1 2 3 22 22 H 1.08998 * 109.47026 * 189.26413 * 1 2 3 23 23 H 1.09008 * 109.47011 * 180.02562 * 3 2 1 24 24 H 1.08994 * 109.47695 * 300.03070 * 3 2 1 25 25 H 1.08999 * 109.46974 * 60.03208 * 3 2 1 26 26 H 1.08996 * 109.52271 * 57.53508 * 4 2 1 27 27 H 1.08999 * 109.52058 * 177.65708 * 4 2 1 28 28 H 0.96702 * 113.99792 * 60.44527 * 7 5 4 29 29 H 0.96997 * 119.99851 * 180.02562 * 13 12 10 30 30 H 1.08999 * 109.47453 * 62.37908 * 18 8 5 31 31 H 1.09003 * 109.47697 * 182.40763 * 18 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 1.5757 -2.1813 -1.2123 6 1 1.9825 -2.7156 -2.0708 7 8 0.1480 -2.2292 -1.2498 8 6 2.0764 -2.8322 0.0807 9 1 3.1665 -2.8410 0.0869 10 6 1.5610 -4.2459 0.1653 11 1 0.9427 -4.6434 -0.6259 12 6 1.8788 -5.0316 1.2528 13 7 2.6321 -4.5476 2.2161 14 14 1.2336 -6.7812 1.3613 15 1 2.2034 -7.7069 0.7227 16 1 1.0567 -7.1561 2.7873 17 1 -0.0723 -6.8716 0.6600 18 6 1.5645 -2.0285 1.2790 19 8 2.0066 -0.6742 1.1663 20 1 -0.3634 0.6504 0.7956 21 1 -0.3633 0.3639 -0.9611 22 1 -0.3633 -1.0142 0.1654 23 1 3.1306 1.4419 -0.0005 24 1 1.6769 1.9565 -0.8896 25 1 1.6778 1.9561 0.8903 26 1 1.6422 -0.2356 -2.1399 27 1 3.1297 -0.6864 -1.2716 28 1 -0.2380 -1.8335 -2.0432 29 1 2.8559 -5.1005 2.9809 30 1 0.4750 -2.0551 1.2957 31 1 1.9531 -2.4623 2.2003 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259725937.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:50 Heat of formation + Delta-G solvation = -104.685326 kcal Electronic energy + Delta-G solvation = -14053.843775 eV Core-core repulsion = 11721.091648 eV Total energy + Delta-G solvation = -2332.752127 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.32480 -35.51017 -33.63902 -32.18576 -30.44058 -27.49944 -26.81271 -24.41581 -22.66228 -20.44498 -18.49517 -16.49627 -15.99711 -15.40571 -14.94480 -14.41567 -13.71744 -13.62288 -12.92302 -12.56725 -12.16846 -11.86030 -11.73289 -11.51380 -11.06776 -10.97456 -10.85136 -10.69995 -10.43525 -10.23166 -10.02877 -9.19693 -9.03378 -8.72668 -8.39140 -8.07258 -6.00485 -4.03350 3.32112 3.38804 3.43547 4.43817 4.76878 5.12064 5.31991 5.40116 5.47827 5.62123 5.84103 6.00770 6.05581 6.16961 6.22482 6.31667 6.36466 6.58063 6.60493 6.72599 6.85076 7.19475 7.24788 7.62091 7.80885 7.99338 8.23148 8.45637 8.63770 8.99785 9.59848 11.07289 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.055559 B = 0.011664 C = 0.010719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.846259 B = 2399.912792 C = 2611.584280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.116 3.884 3 C -0.136 4.136 4 C -0.173 4.173 5 C 0.109 3.891 6 H 0.041 0.959 7 O -0.544 6.544 8 C 0.027 3.973 9 H 0.043 0.957 10 C -0.499 4.499 11 H 0.061 0.939 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.895 3.105 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.065 3.935 19 O -0.393 6.393 20 H 0.042 0.958 21 H 0.046 0.954 22 H 0.102 0.898 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.350 0.650 29 H 0.262 0.738 30 H 0.037 0.963 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.495 7.675 -5.523 9.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.076 3.924 3 C -0.193 4.193 4 C -0.212 4.212 5 C 0.050 3.950 6 H 0.059 0.941 7 O -0.347 6.347 8 C 0.009 3.991 9 H 0.061 0.939 10 C -0.537 4.537 11 H 0.079 0.921 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.011 4.011 19 O -0.313 6.313 20 H 0.061 0.939 21 H 0.065 0.935 22 H 0.120 0.880 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.194 0.806 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.208 7.403 -4.620 9.002 hybrid contribution -0.467 -0.792 -0.706 1.159 sum -2.676 6.611 -5.326 8.901 Atomic orbital electron populations 1.22674 0.96199 1.05047 1.00112 1.21150 0.93084 0.91558 0.86584 1.21763 1.01359 0.94888 1.01283 1.22922 1.01712 0.98639 0.97877 1.22048 0.80227 0.92129 1.00549 0.94087 1.86741 1.20515 1.83337 1.44099 1.19305 0.96535 0.94540 0.88764 0.93937 1.21028 1.30954 0.96038 1.05724 0.92078 1.25019 0.95066 0.98535 0.95805 1.69840 1.37400 1.36576 1.09718 0.86530 0.79315 0.84665 0.77132 1.20792 1.21249 1.19890 1.23017 0.97590 0.77654 1.02802 1.87882 1.74103 1.27717 1.41576 0.93917 0.93452 0.88013 0.92473 0.92277 0.92456 0.92595 0.91172 0.80560 0.92825 0.94477 0.86426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 7.38 37.16 0.27 -2.92 16 2 C 0.12 2.17 1.11 -90.57 -0.10 2.07 16 3 C -0.14 -2.08 8.83 37.16 0.33 -1.75 16 4 C -0.17 -3.11 4.74 -26.59 -0.13 -3.23 16 5 C 0.11 2.28 3.23 -26.55 -0.09 2.19 16 6 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 7 O -0.54 -10.73 8.91 -35.23 -0.31 -11.04 16 8 C 0.03 0.69 2.14 -91.63 -0.20 0.50 16 9 H 0.04 1.19 8.14 -51.92 -0.42 0.76 16 10 C -0.50 -13.90 8.19 -34.44 -0.28 -14.18 16 11 H 0.06 1.71 7.63 -52.49 -0.40 1.31 16 12 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 13 N -0.90 -25.88 11.35 55.43 0.63 -25.25 16 14 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.06 1.64 5.47 37.21 0.20 1.84 16 19 O -0.39 -9.08 10.24 -35.23 -0.36 -9.44 16 20 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 21 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 22 H 0.10 2.03 3.83 -51.93 -0.20 1.83 16 23 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.35 5.11 9.08 45.56 0.41 5.53 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.04 0.95 5.97 -51.93 -0.31 0.64 16 31 H 0.12 3.31 6.15 -51.93 -0.32 2.99 16 LS Contribution 241.96 15.07 3.65 3.65 Total: -1.00 -29.83 241.96 -5.25 -35.08 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -3.75 Total: 4.39 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -0.08 Total: -14.00 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.63 Total: -25.25 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.67 Total: -20.48 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.83 -5.25 -35.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725937.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.607 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds