Wall clock time and date at job start Mon Mar 30 2020 03:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.48948 * 2 1 4 4 C 1.53096 * 109.48029 * 239.97453 * 2 1 3 5 5 C 1.53181 * 109.16217 * 297.62467 * 4 2 1 6 6 H 1.08997 * 109.54282 * 183.14845 * 5 4 2 7 7 O 1.42901 * 109.54078 * 62.88632 * 5 4 2 8 8 C 1.53172 * 109.03644 * 303.02305 * 5 4 2 9 9 H 1.09010 * 109.57558 * 297.04103 * 8 5 4 10 10 C 1.50706 * 109.52264 * 176.88864 * 8 5 4 11 11 H 1.07996 * 119.99680 * 0.30455 * 10 8 5 12 12 C 1.37879 * 120.00044 * 180.31536 * 10 8 5 13 13 N 1.31513 * 119.99919 * 359.97438 * 12 10 8 14 14 Si 1.86793 * 119.99907 * 179.72254 * 12 10 8 15 15 H 1.48496 * 109.47294 * 89.99388 * 14 12 10 16 16 H 1.48503 * 109.47019 * 209.99888 * 14 12 10 17 17 H 1.48504 * 109.46930 * 329.99621 * 14 12 10 18 18 C 1.53094 * 109.16631 * 56.97781 * 8 5 4 19 19 O 1.42900 * 109.41426 * 302.39184 * 18 8 5 20 20 H 1.08997 * 109.47363 * 309.26911 * 1 2 3 21 21 H 1.09003 * 109.47050 * 69.26334 * 1 2 3 22 22 H 1.08998 * 109.47026 * 189.26413 * 1 2 3 23 23 H 1.09008 * 109.47011 * 180.02562 * 3 2 1 24 24 H 1.08994 * 109.47695 * 300.03070 * 3 2 1 25 25 H 1.08999 * 109.46974 * 60.03208 * 3 2 1 26 26 H 1.08996 * 109.52271 * 57.53508 * 4 2 1 27 27 H 1.08999 * 109.52058 * 177.65708 * 4 2 1 28 28 H 0.96702 * 113.99792 * 60.44527 * 7 5 4 29 29 H 0.96997 * 119.99851 * 180.02562 * 13 12 10 30 30 H 1.08999 * 109.47453 * 62.37908 * 18 8 5 31 31 H 1.09003 * 109.47697 * 182.40763 * 18 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 1.5757 -2.1813 -1.2123 6 1 1.9825 -2.7156 -2.0708 7 8 0.1480 -2.2292 -1.2498 8 6 2.0764 -2.8322 0.0807 9 1 3.1665 -2.8410 0.0869 10 6 1.5610 -4.2459 0.1653 11 1 0.9427 -4.6434 -0.6259 12 6 1.8788 -5.0316 1.2528 13 7 2.6321 -4.5476 2.2161 14 14 1.2336 -6.7812 1.3613 15 1 2.2034 -7.7069 0.7227 16 1 1.0567 -7.1561 2.7873 17 1 -0.0723 -6.8716 0.6600 18 6 1.5645 -2.0285 1.2790 19 8 2.0066 -0.6742 1.1663 20 1 -0.3634 0.6504 0.7956 21 1 -0.3633 0.3639 -0.9611 22 1 -0.3633 -1.0142 0.1654 23 1 3.1306 1.4419 -0.0005 24 1 1.6769 1.9565 -0.8896 25 1 1.6778 1.9561 0.8903 26 1 1.6422 -0.2356 -2.1399 27 1 3.1297 -0.6864 -1.2716 28 1 -0.2380 -1.8335 -2.0432 29 1 2.8559 -5.1005 2.9809 30 1 0.4750 -2.0551 1.2957 31 1 1.9531 -2.4623 2.2003 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259725937.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:50 Heat of formation + Delta-G solvation = -126.320034 kcal Electronic energy + Delta-G solvation = -14054.781926 eV Core-core repulsion = 11721.091648 eV Total energy + Delta-G solvation = -2333.690278 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.96700 -37.13061 -35.57589 -33.85477 -32.28821 -29.14840 -28.18512 -26.41162 -24.41150 -22.10564 -20.17492 -18.53435 -17.61338 -17.03449 -16.85175 -16.13028 -15.42247 -15.16602 -14.58745 -14.22803 -13.95306 -13.58495 -13.08229 -12.96052 -12.83152 -12.60182 -12.48368 -12.27630 -12.20894 -11.95053 -11.84693 -11.10122 -10.89574 -10.56929 -10.28077 -9.84482 -8.13353 -6.24251 1.40013 1.41484 1.52449 2.41859 3.07270 3.25572 3.66836 3.96011 4.06714 4.18945 4.41442 4.57337 4.62609 4.76257 4.85266 4.91713 4.93933 5.00438 5.04405 5.18619 5.27605 5.47113 5.52509 5.73693 5.78550 5.89587 6.22589 6.71365 6.88110 7.17519 7.43463 8.93332 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.055559 B = 0.011664 C = 0.010719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.846259 B = 2399.912792 C = 2611.584280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 C -0.130 4.130 4 C -0.165 4.165 5 C 0.115 3.885 6 H 0.043 0.957 7 O -0.557 6.557 8 C 0.021 3.979 9 H 0.007 0.993 10 C -0.516 4.516 11 H 0.056 0.944 12 C 0.006 3.994 13 N -0.924 5.924 14 Si 0.959 3.041 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.084 3.916 19 O -0.413 6.413 20 H 0.044 0.956 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.064 0.936 28 H 0.376 0.624 29 H 0.263 0.737 30 H 0.029 0.971 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.441 8.602 -7.093 11.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.059 3.941 3 C -0.187 4.187 4 C -0.203 4.203 5 C 0.057 3.943 6 H 0.061 0.939 7 O -0.363 6.363 8 C 0.002 3.998 9 H 0.025 0.975 10 C -0.554 4.554 11 H 0.074 0.926 12 C -0.191 4.191 13 N -0.564 5.564 14 Si 0.785 3.215 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.008 3.992 19 O -0.333 6.333 20 H 0.064 0.936 21 H 0.101 0.899 22 H 0.092 0.908 23 H 0.073 0.927 24 H 0.113 0.887 25 H 0.077 0.923 26 H 0.118 0.882 27 H 0.082 0.918 28 H 0.224 0.776 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.161 8.350 -6.217 10.880 hybrid contribution -0.187 -1.015 -0.246 1.061 sum -3.348 7.335 -6.463 10.334 Atomic orbital electron populations 1.22580 0.95011 1.03564 1.02216 1.21665 0.94268 0.93003 0.85128 1.21768 1.01285 0.92522 1.03150 1.22858 1.01497 0.96587 0.99357 1.21735 0.81057 0.93857 0.97675 0.93863 1.86689 1.19611 1.83997 1.46025 1.19214 0.94459 0.94377 0.91751 0.97511 1.21311 1.30937 0.97487 1.05652 0.92616 1.25830 0.95278 1.02550 0.95488 1.69991 1.38340 1.37919 1.10144 0.85529 0.78856 0.79920 0.77199 1.19952 1.20868 1.19408 1.22489 0.96491 0.79053 1.01141 1.87832 1.74671 1.26468 1.44356 0.93645 0.89932 0.90792 0.92700 0.88682 0.92329 0.88163 0.91757 0.77617 0.92831 0.95324 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.66 7.38 71.98 0.53 -5.13 16 2 C 0.10 3.45 1.11 -10.76 -0.01 3.44 16 3 C -0.13 -3.55 8.83 71.98 0.64 -2.91 16 4 C -0.17 -5.47 4.74 30.69 0.15 -5.32 16 5 C 0.12 4.69 3.23 30.71 0.10 4.79 16 6 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 7 O -0.56 -20.90 8.91 -148.98 -1.33 -22.22 16 8 C 0.02 1.08 2.14 -11.45 -0.02 1.06 16 9 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 10 C -0.52 -29.26 8.19 25.60 0.21 -29.05 16 11 H 0.06 3.14 7.63 -2.91 -0.02 3.12 16 12 C 0.01 0.36 5.30 84.66 0.45 0.81 16 13 N -0.92 -55.04 11.35 21.45 0.24 -54.80 16 14 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 15 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 C 0.08 4.42 5.47 72.01 0.39 4.81 16 19 O -0.41 -19.22 10.24 -148.98 -1.52 -20.75 16 20 H 0.04 1.40 8.12 -2.39 -0.02 1.38 16 21 H 0.08 2.03 8.12 -2.39 -0.02 2.01 16 22 H 0.07 2.84 3.83 -2.39 -0.01 2.83 16 23 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 24 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 26 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.38 9.66 9.08 -74.06 -0.67 8.99 16 29 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 30 H 0.03 1.52 5.97 -2.39 -0.01 1.50 16 31 H 0.08 4.75 6.15 -2.39 -0.01 4.74 16 Total: -1.00 -65.92 241.96 2.29 -63.63 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.44 Total: 14.81 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 2.43 Total: -27.51 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.24 Total: -54.80 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -2.85 Total: -42.97 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.92 2.29 -63.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725937.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.692 kcal (2) G-P(sol) polarization free energy of solvation -65.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds