Wall clock time and date at job start Mon Mar 30 2020 01:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39905 * 109.47445 * 2 1 4 4 C 1.50700 * 109.47254 * 119.99734 * 2 1 3 5 5 H 1.08006 * 119.99694 * 114.48039 * 4 2 1 6 6 C 1.37869 * 120.00201 * 294.48392 * 4 2 1 7 7 N 1.31520 * 120.00124 * 158.71326 * 6 4 2 8 8 Si 1.86800 * 120.00137 * 338.43250 * 6 4 2 9 9 H 1.48496 * 109.47602 * 180.27769 * 8 6 4 10 10 H 1.48507 * 109.47005 * 300.27602 * 8 6 4 11 11 H 1.48501 * 109.47082 * 60.27513 * 8 6 4 12 12 C 1.50700 * 109.47196 * 239.99962 * 2 1 3 13 13 C 1.33391 * 125.19969 * 74.99947 * 12 2 1 14 14 C 1.38428 * 114.91619 * 179.97438 * 13 12 2 15 15 C 1.33388 * 114.92350 * 0.02562 * 14 13 12 16 16 S 1.75880 * 125.20431 * 254.69547 * 12 2 1 17 17 H 1.08999 * 109.47118 * 293.33175 * 1 2 3 18 18 H 1.08999 * 109.46921 * 53.33321 * 1 2 3 19 19 H 1.08996 * 109.46821 * 173.33190 * 1 2 3 20 20 H 0.96997 * 119.99738 * 354.63188 * 7 6 4 21 21 H 1.07995 * 122.54485 * 0.02562 * 13 12 2 22 22 H 1.08001 * 122.53270 * 180.02562 * 14 13 12 23 23 H 1.07997 * 125.19782 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5778 -1.6375 1.1339 6 6 1.7957 -0.1767 2.4795 7 7 1.8417 -0.9481 3.5437 8 14 1.4173 1.6435 2.6611 9 1 1.2098 1.9653 4.0959 10 1 2.5544 2.4404 2.1346 11 1 0.1869 1.9720 1.8972 12 6 2.0324 -0.7104 -1.2305 13 6 2.0227 -0.2081 -2.4661 14 6 2.5375 -1.0460 -3.4403 15 6 2.9648 -2.2289 -2.9959 16 16 2.7280 -2.3256 -1.2557 17 1 -0.3633 0.4070 0.9436 18 1 -0.3633 0.6137 -0.8243 19 1 -0.3633 -1.0207 -0.1193 20 1 1.9648 -1.9051 3.4440 21 1 1.6428 0.7778 -2.6895 22 1 2.5893 -0.7633 -4.4814 23 1 3.3944 -3.0065 -3.6100 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259747212.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:39 Heat of formation + Delta-G solvation = -40.131347 kcal Electronic energy + Delta-G solvation = -10895.065767 eV Core-core repulsion = 8748.572382 eV Total energy + Delta-G solvation = -2146.493385 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.037 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.47344 -38.62737 -35.70156 -33.32089 -29.45054 -27.20229 -25.07222 -22.45271 -20.35519 -19.38683 -18.34305 -16.65493 -16.38464 -15.91375 -15.47884 -15.02554 -14.57185 -14.07205 -13.60472 -13.49309 -13.11062 -12.97430 -12.48707 -12.24361 -12.18342 -11.67438 -11.22383 -10.99951 -10.59296 -9.55788 -9.37198 -8.89182 -6.64466 0.15192 0.81166 1.29518 1.43293 1.51964 1.80843 1.89923 2.38363 2.88186 3.79583 4.09368 4.25722 4.48532 4.56823 4.71078 4.74346 5.11032 5.16868 5.31008 5.40119 5.54187 5.80973 5.91065 6.37822 7.17224 8.45311 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.053402 B = 0.014263 C = 0.012292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.203857 B = 1962.714777 C = 2277.408740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.264 3.736 3 F -0.230 7.230 4 C -0.645 4.645 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.909 5.909 8 Si 1.093 2.907 9 H -0.303 1.303 10 H -0.284 1.284 11 H -0.251 1.251 12 C -0.196 4.196 13 C -0.146 4.146 14 C -0.136 4.136 15 C -0.228 4.228 16 S 0.091 5.909 17 H 0.057 0.943 18 H 0.068 0.932 19 H 0.066 0.934 20 H 0.263 0.737 21 H 0.147 0.853 22 H 0.171 0.829 23 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.072 0.268 -12.576 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.244 3.756 3 F -0.211 7.211 4 C -0.682 4.682 5 H 0.074 0.926 6 C -0.193 4.193 7 N -0.541 5.541 8 Si 0.918 3.082 9 H -0.231 1.231 10 H -0.210 1.210 11 H -0.176 1.176 12 C -0.314 4.314 13 C -0.177 4.177 14 C -0.166 4.166 15 C -0.363 4.363 16 S 0.355 5.645 17 H 0.076 0.924 18 H 0.087 0.913 19 H 0.085 0.915 20 H 0.072 0.928 21 H 0.164 0.836 22 H 0.188 0.812 23 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.027 0.327 -10.389 10.445 hybrid contribution 0.322 -0.419 -1.684 1.765 sum -0.705 -0.092 -12.073 12.094 Atomic orbital electron populations 1.22406 0.93911 1.02627 1.02003 1.17464 0.92657 0.74613 0.90857 1.92485 1.91085 1.41038 1.96533 1.22439 1.42736 1.10852 0.92222 0.92556 1.26912 0.91803 1.08871 0.91762 1.70954 1.44251 1.06529 1.32334 0.83495 0.78785 0.71540 0.74356 1.23111 1.21007 1.17569 1.25097 1.07439 0.99790 0.99037 1.20392 1.03779 1.02268 0.91273 1.20372 1.01362 0.93303 1.01530 1.26170 1.09211 1.03349 0.97540 1.84514 1.59887 1.14884 1.05182 0.92449 0.91278 0.91519 0.92803 0.83571 0.81186 0.79052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.42 8.63 71.98 0.62 -5.80 14 2 C 0.26 12.72 1.07 -12.29 -0.01 12.71 14 3 F -0.23 -11.37 13.21 44.97 0.59 -10.77 14 4 C -0.65 -36.25 8.46 25.60 0.22 -36.04 14 5 H 0.06 3.34 6.40 -2.91 -0.02 3.32 14 6 C 0.01 0.59 5.22 84.65 0.44 1.03 14 7 N -0.91 -55.47 13.70 21.45 0.29 -55.18 14 8 Si 1.09 53.41 24.93 68.60 1.71 55.12 14 9 H -0.30 -14.71 7.11 99.48 0.71 -14.00 14 10 H -0.28 -13.76 7.05 99.48 0.70 -13.06 14 11 H -0.25 -10.99 6.03 99.48 0.60 -10.39 14 12 C -0.20 -8.30 5.34 24.59 0.13 -8.17 14 13 C -0.15 -5.12 9.89 21.22 0.21 -4.91 14 14 C -0.14 -3.83 10.18 21.22 0.22 -3.62 14 15 C -0.23 -6.53 11.23 66.72 0.75 -5.78 14 16 S 0.09 3.52 21.33 -56.49 -1.20 2.32 14 17 H 0.06 2.51 5.29 -2.39 -0.01 2.50 14 18 H 0.07 2.48 8.14 -2.39 -0.02 2.46 14 19 H 0.07 2.73 8.14 -2.39 -0.02 2.71 14 20 H 0.26 16.02 8.73 -92.71 -0.81 15.21 14 21 H 0.15 4.63 8.06 -2.91 -0.02 4.60 14 22 H 0.17 3.43 8.06 -2.91 -0.02 3.41 14 23 H 0.19 3.98 8.06 -2.91 -0.02 3.96 14 Total: -1.00 -63.37 214.24 5.02 -58.35 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: 1.06 Total: 0.73 kcal Atomic # 6 Polarization: -53.13 SS G_CDS: 2.57 Total: -50.56 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.29 Total: -55.18 kcal Atomic # 9 Polarization: -11.37 SS G_CDS: 0.59 Total: -10.77 kcal Atomic # 14 Polarization: 53.41 SS G_CDS: 1.71 Total: 55.12 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.20 Total: 2.32 kcal Total: -63.37 5.02 -58.35 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259747212.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.218 kcal (2) G-P(sol) polarization free energy of solvation -63.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds