Wall clock time and date at job start Mon Mar 30 2020 02:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.57746 * 2 1 4 4 C 1.53113 * 109.57852 * 239.57034 * 2 1 3 5 5 C 1.52575 * 109.95343 * 177.12647 * 4 2 1 6 6 H 1.08999 * 109.22803 * 310.44465 * 5 4 2 7 7 C 1.50697 * 109.23151 * 191.03908 * 5 4 2 8 8 H 1.07998 * 119.99621 * 353.83729 * 7 5 4 9 9 C 1.37878 * 120.00132 * 173.84547 * 7 5 4 10 10 N 1.31510 * 120.00050 * 163.98527 * 9 7 5 11 11 Si 1.86803 * 119.99877 * 343.97650 * 9 7 5 12 12 H 1.48498 * 109.46825 * 180.02562 * 11 9 7 13 13 H 1.48497 * 109.46974 * 60.00332 * 11 9 7 14 14 H 1.48504 * 109.47354 * 300.00438 * 11 9 7 15 15 C 1.52590 * 110.69001 * 70.73766 * 5 4 2 16 16 C 1.53098 * 109.95483 * 289.30725 * 15 5 4 17 17 S 1.81745 * 108.84375 * 63.02506 * 16 15 5 18 18 H 1.09007 * 109.46868 * 299.74629 * 1 2 3 19 19 H 1.08997 * 109.46743 * 59.74129 * 1 2 3 20 20 H 1.08999 * 109.46924 * 179.74610 * 1 2 3 21 21 H 1.09004 * 109.47209 * 180.25832 * 3 2 1 22 22 H 1.09000 * 109.46804 * 300.25667 * 3 2 1 23 23 H 1.09001 * 109.47262 * 60.25733 * 3 2 1 24 24 H 1.09004 * 109.35811 * 57.00077 * 4 2 1 25 25 H 1.09002 * 109.43092 * 297.29647 * 4 2 1 26 26 H 0.97003 * 120.00225 * 354.57955 * 10 9 7 27 27 H 1.08998 * 109.39017 * 49.45191 * 15 5 4 28 28 H 1.09004 * 109.38826 * 169.16009 * 15 5 4 29 29 H 1.08995 * 109.57472 * 182.83192 * 16 15 5 30 30 H 1.09000 * 109.57763 * 303.21679 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0427 1.4416 0.0000 4 6 2.0431 -0.7306 -1.2439 5 6 3.5671 -0.6740 -1.2894 6 1 3.8928 0.3551 -1.1379 7 6 4.0415 -1.1511 -2.6379 8 1 3.3343 -1.5553 -3.3470 9 6 5.3782 -1.0717 -2.9662 10 7 5.8469 -1.7579 -3.9854 11 14 6.5235 0.0110 -1.9633 12 1 7.8987 -0.0770 -2.5169 13 1 6.5277 -0.4477 -0.5510 14 1 6.0546 1.4187 -2.0253 15 6 4.1721 -1.5576 -0.2024 16 6 3.9293 -0.9329 1.1740 17 16 2.1390 -0.8628 1.4792 18 1 -0.3633 0.5099 0.8923 19 1 -0.3633 0.5178 -0.8877 20 1 -0.3633 -1.0277 -0.0046 21 1 3.1327 1.4396 -0.0046 22 1 1.6765 1.9574 -0.8877 23 1 1.6841 1.9548 0.8923 24 1 1.6364 -0.2544 -2.1361 25 1 1.7204 -1.7713 -1.2120 26 1 5.2711 -2.3797 -4.4574 27 1 3.7097 -2.5440 -0.2388 28 1 5.2446 -1.6558 -0.3712 29 1 4.4069 -1.5424 1.9411 30 1 4.3431 0.0752 1.1958 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259770131.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:48 Heat of formation + Delta-G solvation = -26.698755 kcal Electronic energy + Delta-G solvation = -11655.630713 eV Core-core repulsion = 9769.013208 eV Total energy + Delta-G solvation = -1886.617505 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.47007 -33.86052 -31.98966 -28.74202 -27.08688 -25.32306 -22.42580 -20.51341 -19.06341 -17.56381 -15.99742 -14.47267 -14.34360 -13.95989 -13.30372 -13.14040 -12.95614 -12.50086 -12.40641 -11.93542 -11.45690 -11.25908 -10.90684 -10.75980 -10.50075 -10.34703 -10.14594 -9.60989 -9.48089 -8.99215 -8.77920 -8.32440 -7.20498 -6.45299 -4.09478 2.28368 3.02065 3.33324 3.38799 3.56775 4.46600 5.11951 5.17849 5.21528 5.50591 5.58517 5.68864 5.84025 5.93244 6.02172 6.05729 6.17754 6.24589 6.30034 6.38370 6.48059 6.68369 6.82794 6.89007 7.23731 7.48186 8.10152 8.35401 8.86909 9.58265 10.91485 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.045269 B = 0.013301 C = 0.012299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.375697 B = 2104.548177 C = 2276.125284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.021 4.021 3 C -0.140 4.140 4 C -0.089 4.089 5 C 0.011 3.989 6 H 0.026 0.974 7 C -0.594 4.594 8 H 0.055 0.945 9 C 0.032 3.968 10 N -0.908 5.908 11 Si 1.039 2.961 12 H -0.286 1.286 13 H -0.273 1.273 14 H -0.284 1.284 15 C -0.123 4.123 16 C -0.075 4.075 17 S -0.294 6.294 18 H 0.056 0.944 19 H 0.066 0.934 20 H 0.060 0.940 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.268 0.732 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.280 4.242 8.958 11.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.130 4.130 3 C -0.199 4.199 4 C -0.128 4.128 5 C -0.008 4.008 6 H 0.044 0.956 7 C -0.632 4.632 8 H 0.074 0.926 9 C -0.173 4.173 10 N -0.541 5.541 11 Si 0.867 3.133 12 H -0.212 1.212 13 H -0.199 1.199 14 H -0.210 1.210 15 C -0.162 4.162 16 C -0.224 4.224 17 S -0.067 6.067 18 H 0.075 0.925 19 H 0.085 0.915 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.288 4.392 9.925 12.072 hybrid contribution -0.857 -0.197 -1.095 1.405 sum -6.145 4.195 8.829 11.546 Atomic orbital electron populations 1.21650 0.92502 1.02375 1.01787 1.22782 0.97727 0.97205 0.95328 1.22121 1.02097 0.94072 1.01578 1.21726 0.98176 0.99147 0.93747 1.19018 0.91134 0.95152 0.95506 0.95583 1.21978 0.95212 1.46246 0.99765 0.92628 1.25741 0.96828 0.97353 0.97409 1.70826 1.38800 1.23339 1.21177 0.84160 0.76399 0.76590 0.76147 1.21202 1.19926 1.21026 1.22310 1.02368 1.00242 0.91306 1.23548 0.92315 1.03941 1.02554 1.86276 1.09384 1.78686 1.32345 0.92508 0.91544 0.92058 0.91721 0.91991 0.92496 0.91920 0.92122 0.92209 0.91954 0.91008 0.89248 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 8.51 37.16 0.32 -1.46 16 2 C -0.02 -0.35 0.87 -90.56 -0.08 -0.43 16 3 C -0.14 -2.23 8.03 37.16 0.30 -1.94 16 4 C -0.09 -1.80 3.85 -26.89 -0.10 -1.90 16 5 C 0.01 0.25 1.30 -92.20 -0.12 0.13 16 6 H 0.03 0.61 4.50 -51.93 -0.23 0.37 16 7 C -0.59 -16.39 8.78 -34.44 -0.30 -16.69 16 8 H 0.06 1.66 7.99 -52.49 -0.42 1.24 16 9 C 0.03 0.90 5.27 -17.82 -0.09 0.80 16 10 N -0.91 -27.68 13.69 55.43 0.76 -26.92 16 11 Si 1.04 24.76 26.18 -169.99 -4.45 20.31 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -5.92 5.75 56.52 0.32 -5.60 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C -0.12 -2.65 4.62 -26.89 -0.12 -2.77 16 16 C -0.08 -1.37 6.08 37.21 0.23 -1.15 16 17 S -0.29 -5.18 21.11 -107.50 -2.27 -7.45 16 18 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 19 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 20 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.06 1.12 5.18 -51.93 -0.27 0.85 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 25 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 26 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16 27 H 0.06 1.37 8.05 -51.93 -0.42 0.95 16 28 H 0.07 1.63 4.72 -51.93 -0.25 1.38 16 29 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.07 1.31 7.44 -51.93 -0.39 0.92 16 LS Contribution 239.85 15.07 3.61 3.61 Total: -1.00 -28.80 239.85 -6.90 -35.70 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.57 Total: 0.15 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 0.02 Total: -25.41 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.76 Total: -26.92 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -4.45 Total: 20.31 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -2.27 Total: -7.45 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.80 -6.90 -35.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770131.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.002 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds