Wall clock time and date at job start Mon Mar 30 2020 03:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47111 * 2 1 4 4 C 1.53000 * 109.47526 * 119.99816 * 2 1 3 5 5 H 1.09007 * 110.38262 * 49.92190 * 4 2 1 6 6 S 1.83398 * 110.34313 * 287.69930 * 4 2 1 7 7 C 1.83990 * 95.84968 * 221.37328 * 6 4 2 8 8 C 1.55004 * 100.82207 * 35.42044 * 7 6 4 9 9 C 1.52941 * 109.04266 * 318.39205 * 8 7 6 10 10 H 1.09002 * 108.88495 * 269.56003 * 9 8 7 11 11 C 1.50694 * 108.88677 * 151.00662 * 9 8 7 12 12 H 1.07999 * 119.99635 * 242.44833 * 11 9 8 13 13 C 1.37872 * 119.99968 * 62.45354 * 11 9 8 14 14 N 1.31514 * 119.99800 * 179.72176 * 13 11 9 15 15 Si 1.86790 * 120.00215 * 359.97438 * 13 11 9 16 16 H 1.48497 * 109.47246 * 269.72649 * 15 13 11 17 17 H 1.48502 * 109.47189 * 29.72714 * 15 13 11 18 18 H 1.48498 * 109.47457 * 149.72613 * 15 13 11 19 19 H 1.09004 * 109.46783 * 299.99895 * 1 2 3 20 20 H 1.09000 * 109.47054 * 59.99854 * 1 2 3 21 21 H 1.08996 * 109.46897 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47523 * 240.00031 * 2 1 3 23 23 H 1.08996 * 109.47009 * 291.98959 * 3 2 1 24 24 H 1.09003 * 109.46681 * 51.98828 * 3 2 1 25 25 H 1.08998 * 109.47168 * 171.98972 * 3 2 1 26 26 H 1.08996 * 111.12844 * 153.25767 * 7 6 4 27 27 H 1.08996 * 111.13191 * 277.39264 * 7 6 4 28 28 H 1.08992 * 109.47027 * 198.48861 * 8 7 6 29 29 H 1.09000 * 109.65375 * 78.39941 * 8 7 6 30 30 H 0.96998 * 120.00445 * 180.27159 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.5465 -1.6869 1.3583 6 16 1.7598 0.3099 2.7398 7 6 3.3839 -0.0509 3.5255 8 6 4.2980 -0.1397 2.2768 9 6 3.5643 -0.9056 1.1748 10 1 3.7963 -1.9665 1.2680 11 6 4.0500 -0.4168 -0.1653 12 1 3.3619 0.0588 -0.8484 13 6 5.3729 -0.5769 -0.5194 14 7 5.7956 -0.1552 -1.6912 15 14 6.5631 -1.3990 0.6623 16 1 7.1850 -0.3702 1.5341 17 1 5.8294 -2.3806 1.5010 18 1 7.6213 -2.0998 -0.1085 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.7984 1.9134 -0.9529 24 1 1.5644 1.9960 0.8097 25 1 3.1206 1.4459 0.1432 26 1 3.6928 0.7634 4.1809 27 1 3.3579 -0.9977 4.0647 28 1 5.2176 -0.6639 2.5363 29 1 4.5387 0.8640 1.9264 30 1 6.7253 -0.2713 -1.9420 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259794965.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:08 Heat of formation + Delta-G solvation = -1.005009 kcal Electronic energy + Delta-G solvation = -11771.950110 eV Core-core repulsion = 9886.446770 eV Total energy + Delta-G solvation = -1885.503340 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -37.45830 -33.65646 -32.05929 -28.37295 -26.56960 -25.51774 -22.78466 -20.12724 -19.11739 -16.76564 -15.66726 -14.83251 -14.28362 -14.24223 -13.54677 -12.81969 -12.73901 -12.19620 -11.79084 -11.57986 -11.11253 -10.96205 -10.90268 -10.59468 -10.33688 -10.01062 -9.95383 -9.76052 -9.51618 -8.99137 -8.61573 -8.56205 -6.95768 -6.11350 -4.10307 2.60670 3.08294 3.22648 3.31025 3.33311 4.35361 5.15741 5.46467 5.54878 5.58938 5.71462 5.80112 5.92841 6.05703 6.21220 6.32527 6.43041 6.57136 6.59284 6.68252 6.77327 6.82281 7.04762 7.23003 7.33141 7.59288 7.66775 8.44882 8.93083 9.48555 10.98684 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.037060 B = 0.016677 C = 0.012784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.340123 B = 1678.576619 C = 2189.762484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.069 4.069 3 C -0.151 4.151 4 C 0.004 3.996 5 H 0.074 0.926 6 S -0.329 6.329 7 C -0.069 4.069 8 C -0.126 4.126 9 C 0.004 3.996 10 H 0.033 0.967 11 C -0.524 4.524 12 H 0.112 0.888 13 C 0.074 3.926 14 N -0.896 5.896 15 Si 0.870 3.130 16 H -0.278 1.278 17 H -0.267 1.267 18 H -0.294 1.294 19 H 0.049 0.951 20 H 0.049 0.951 21 H 0.044 0.956 22 H 0.098 0.902 23 H 0.033 0.967 24 H 0.048 0.952 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 -0.403 6.267 8.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 C -0.208 4.208 4 C -0.124 4.124 5 H 0.092 0.908 6 S -0.103 6.103 7 C -0.217 4.217 8 C -0.165 4.165 9 C -0.016 4.016 10 H 0.051 0.949 11 C -0.562 4.562 12 H 0.130 0.870 13 C -0.128 4.128 14 N -0.534 5.534 15 Si 0.699 3.301 16 H -0.204 1.204 17 H -0.192 1.192 18 H -0.221 1.221 19 H 0.068 0.932 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.116 0.884 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.117 0.883 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.906 0.295 6.513 8.798 hybrid contribution 1.810 -1.227 0.346 2.214 sum -4.097 -0.932 6.859 8.043 Atomic orbital electron populations 1.21976 0.97233 1.00563 1.00951 1.21114 0.92663 0.97776 0.97354 1.22260 1.05203 0.94194 0.99192 1.23717 0.99709 0.96987 0.92029 0.90768 1.87207 1.27460 1.68858 1.26739 1.24262 0.94136 1.03230 1.00085 1.22949 0.97764 1.03036 0.92710 1.19674 0.89140 0.96661 0.96157 0.94862 1.21722 0.95804 1.39255 0.99374 0.87029 1.25026 0.98136 0.94864 0.94783 1.69867 1.16396 1.46740 1.20359 0.87100 0.81308 0.80377 0.81321 1.20424 1.19202 1.22145 0.93195 0.93232 0.93643 0.88441 0.94833 0.93352 0.88285 0.89152 0.90592 0.92748 0.90065 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.08 37.16 0.34 -2.14 16 2 C -0.07 -1.35 2.18 -90.61 -0.20 -1.54 16 3 C -0.15 -3.03 7.49 37.16 0.28 -2.76 16 4 C 0.00 0.07 3.05 -26.36 -0.08 -0.01 16 5 H 0.07 1.41 8.13 -51.93 -0.42 0.98 16 6 S -0.33 -6.17 20.13 -107.50 -2.16 -8.33 16 7 C -0.07 -1.21 7.52 38.22 0.29 -0.92 16 8 C -0.13 -2.59 4.53 -25.70 -0.12 -2.70 16 9 C 0.00 0.09 2.04 -91.44 -0.19 -0.10 16 10 H 0.03 0.77 6.90 -51.93 -0.36 0.41 16 11 C -0.52 -13.32 6.24 -34.44 -0.21 -13.54 16 12 H 0.11 2.94 3.78 -52.49 -0.20 2.75 16 13 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 14 N -0.90 -25.97 13.96 55.43 0.77 -25.20 16 15 Si 0.87 20.73 24.43 -169.99 -4.15 16.58 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.12 6.30 56.52 0.36 -5.77 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H 0.05 0.83 7.56 -51.93 -0.39 0.43 16 20 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.10 2.07 6.28 -51.93 -0.33 1.75 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.93 6.98 -51.93 -0.36 0.57 16 25 H 0.10 2.27 5.21 -51.93 -0.27 2.00 16 26 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.05 1.12 4.98 -51.93 -0.26 0.87 16 29 H 0.08 1.77 7.64 -51.93 -0.40 1.38 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 233.07 15.07 3.51 3.51 Total: -1.00 -26.90 233.07 -6.30 -33.20 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.28 Total: 2.05 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 0.01 Total: -21.80 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.77 Total: -25.20 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.15 Total: 16.58 kcal Atomic # 16 Polarization: -6.17 SS G_CDS: -2.16 Total: -8.33 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -26.90 -6.30 -33.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259794965.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.191 kcal (2) G-P(sol) polarization free energy of solvation -26.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds