Wall clock time and date at job start Mon Mar 30 2020 02:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99542 * 2 1 4 4 H 1.48499 * 109.46868 * 269.99903 * 3 2 1 5 5 H 1.48495 * 109.47332 * 29.99816 * 3 2 1 6 6 H 1.48498 * 109.47241 * 149.99999 * 3 2 1 7 7 C 1.37870 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99682 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00341 * 0.02562 * 7 2 1 10 10 C 1.50694 * 109.47173 * 179.97438 * 9 7 2 11 11 O 1.20762 * 120.00437 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00047 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.60636 * 331.11397 * 12 10 9 14 14 C 1.54388 * 109.56329 * 211.02184 * 12 10 9 15 15 C 1.55137 * 106.63512 * 192.86821 * 14 12 10 16 16 S 1.83457 * 102.38931 * 42.06860 * 15 14 12 17 17 C 1.54268 * 109.61086 * 91.44993 * 12 10 9 18 18 H 0.97003 * 120.00704 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.46773 * 60.00215 * 9 7 2 20 20 H 1.09001 * 109.46894 * 300.00341 * 9 7 2 21 21 H 1.09003 * 110.23157 * 73.52028 * 14 12 10 22 22 H 1.08999 * 109.98114 * 312.07443 * 14 12 10 23 23 H 1.09002 * 110.85765 * 283.78803 * 15 14 12 24 24 H 1.08996 * 110.85445 * 160.34805 * 15 14 12 25 25 H 1.08999 * 110.40293 * 29.08679 * 17 12 10 26 26 H 1.08995 * 110.50195 * 266.71428 * 17 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2305 -3.6444 0.0005 11 8 3.4178 -3.4238 0.0010 12 6 1.7282 -5.0653 0.0000 13 1 0.7585 -5.1107 0.4956 14 6 2.7311 -5.9684 0.7498 15 6 2.3336 -7.4337 0.4311 16 16 1.9544 -7.3576 -1.3622 17 6 1.5909 -5.5653 -1.4530 18 1 -0.4851 0.8400 -0.0004 19 1 0.6249 -2.5571 -0.8897 20 1 0.6241 -2.5567 0.8903 21 1 2.6687 -5.7907 1.8234 22 1 3.7440 -5.7726 0.3979 23 1 1.4533 -7.7299 1.0017 24 1 3.1648 -8.1119 0.6235 25 1 2.3126 -5.0635 -2.0974 26 1 0.5774 -5.4013 -1.8189 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259826638.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:12 Heat of formation + Delta-G solvation = -74.156773 kcal Electronic energy + Delta-G solvation = -10739.697289 eV Core-core repulsion = 8715.188756 eV Total energy + Delta-G solvation = -2024.508533 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 200.061 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.61761 -36.47016 -35.14100 -31.67318 -30.35322 -26.88955 -25.37517 -22.55222 -20.12843 -18.56295 -17.61510 -17.37521 -16.61176 -16.14885 -15.46035 -15.12462 -14.68119 -14.27037 -13.62925 -13.44462 -13.26876 -12.99552 -12.81910 -12.64067 -12.47035 -12.10384 -11.87518 -11.47821 -11.14773 -10.64751 -10.13756 -8.74189 -8.27070 -6.35807 0.78496 1.04460 1.38528 1.38786 1.47563 1.51043 2.38013 3.07759 3.17807 3.53899 3.75618 3.98449 4.07085 4.21218 4.55983 4.57183 4.69263 4.85145 4.88343 5.06803 5.17013 5.27613 5.68028 6.08057 6.74686 6.83744 7.33748 8.84328 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.078030 B = 0.007634 C = 0.007401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.749655 B = 3666.825761 C = 3782.341380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.055 0.945 9 C -0.029 4.029 10 C 0.375 3.625 11 O -0.488 6.488 12 C -0.142 4.142 13 H 0.123 0.877 14 C -0.116 4.116 15 C -0.052 4.052 16 S -0.322 6.322 17 C -0.050 4.050 18 H 0.267 0.733 19 H 0.048 0.952 20 H 0.049 0.951 21 H 0.101 0.899 22 H 0.070 0.930 23 H 0.114 0.886 24 H 0.122 0.878 25 H 0.078 0.922 26 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.148 -12.333 1.236 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.066 4.066 10 C 0.252 3.748 11 O -0.364 6.364 12 C -0.163 4.163 13 H 0.142 0.858 14 C -0.155 4.155 15 C -0.200 4.200 16 S -0.096 6.096 17 C -0.198 4.198 18 H 0.076 0.924 19 H 0.065 0.935 20 H 0.067 0.933 21 H 0.120 0.880 22 H 0.089 0.911 23 H 0.133 0.867 24 H 0.140 0.860 25 H 0.097 0.903 26 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.613 -12.975 0.388 13.080 hybrid contribution 0.162 1.983 0.681 2.103 sum 1.776 -10.992 1.068 11.185 Atomic orbital electron populations 1.70024 1.07158 1.28079 1.51053 1.25769 0.95786 1.02731 0.94463 0.85524 0.78589 0.78889 0.78547 1.19797 1.19982 1.19760 1.21448 0.93687 0.91814 1.51441 0.92698 1.19579 0.95496 0.92359 0.99136 1.25035 0.89678 0.92050 0.68072 1.90233 1.20912 1.87927 1.37308 1.22730 1.03172 0.94066 0.96302 0.85844 1.22596 0.99129 0.91758 1.02030 1.24332 1.06253 0.98746 0.90643 1.87504 1.91877 1.12867 1.17395 1.23790 1.06190 0.92428 0.97373 0.92401 0.93452 0.93341 0.88037 0.91080 0.86736 0.86010 0.90285 0.86609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.41 13.29 21.44 0.28 -53.13 15 2 C 0.01 0.64 5.46 84.65 0.46 1.11 15 3 Si 0.96 44.51 29.54 68.60 2.03 46.54 15 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 15 5 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 6 H -0.27 -12.58 7.11 99.48 0.71 -11.88 15 7 C -0.55 -31.25 8.92 25.60 0.23 -31.02 15 8 H 0.05 3.27 6.76 -2.91 -0.02 3.25 15 9 C -0.03 -1.42 5.38 29.10 0.16 -1.26 15 10 C 0.38 15.61 6.07 29.10 0.18 15.79 15 11 O -0.49 -23.34 15.09 -1.45 -0.02 -23.36 15 12 C -0.14 -4.25 2.89 -10.64 -0.03 -4.28 15 13 H 0.12 3.20 8.12 -2.39 -0.02 3.18 15 14 C -0.12 -2.94 5.63 31.80 0.18 -2.76 15 15 C -0.05 -1.04 7.36 72.71 0.54 -0.50 15 16 S -0.32 -8.41 23.26 -56.49 -1.31 -9.72 15 17 C -0.05 -1.42 6.81 72.41 0.49 -0.93 15 18 H 0.27 14.51 8.31 -92.71 -0.77 13.74 15 19 H 0.05 2.38 8.14 -2.39 -0.02 2.36 15 20 H 0.05 2.42 8.14 -2.39 -0.02 2.40 15 21 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.07 2.09 7.47 -2.39 -0.02 2.07 15 23 H 0.11 1.81 8.14 -2.39 -0.02 1.79 15 24 H 0.12 1.98 8.14 -2.39 -0.02 1.96 15 25 H 0.08 2.51 7.89 -2.39 -0.02 2.49 15 26 H 0.12 2.99 8.14 -2.39 -0.02 2.97 15 Total: -1.00 -64.31 238.40 4.33 -59.97 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: 1.16 Total: 3.55 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 2.20 Total: -23.86 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.28 Total: -53.13 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.02 Total: -23.36 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.31 Total: -9.72 kcal Total: -64.31 4.33 -59.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826638.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.183 kcal (2) G-P(sol) polarization free energy of solvation -64.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds