Wall clock time and date at job start Mon Mar 30 2020 03:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 119.99924 * 2 1 4 4 O 1.21583 * 120.00267 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00249 * 179.97438 * 3 2 1 6 6 C 1.47067 * 136.05152 * 359.62914 * 5 3 2 7 7 C 1.53497 * 87.98534 * 153.13820 * 6 5 3 8 8 O 1.42898 * 114.38988 * 139.66779 * 7 6 5 9 9 C 1.34922 * 117.00237 * 116.31410 * 8 7 6 10 10 H 1.07997 * 119.99845 * 0.02562 * 9 8 7 11 11 C 1.38636 * 119.99993 * 180.02562 * 9 8 7 12 12 N 1.31576 * 120.00201 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99663 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47513 * 60.00171 * 13 11 9 15 15 H 1.48503 * 109.46619 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47285 * 299.99305 * 13 11 9 17 17 C 1.47066 * 136.06263 * 179.97438 * 5 3 2 18 18 H 1.09000 * 109.47417 * 180.02562 * 1 2 3 19 19 H 1.09005 * 109.47303 * 300.00582 * 1 2 3 20 20 H 1.09000 * 109.47219 * 60.00222 * 1 2 3 21 21 H 0.96995 * 119.99876 * 179.97438 * 2 1 3 22 22 H 1.09007 * 113.46858 * 267.91303 * 6 5 3 23 23 H 1.08993 * 113.47208 * 38.35639 * 6 5 3 24 24 H 1.09006 * 114.20377 * 272.47966 * 7 6 5 25 25 H 0.97001 * 120.00441 * 180.02562 * 12 11 9 26 26 H 1.09005 * 113.46156 * 321.64401 * 17 5 3 27 27 H 1.08994 * 113.46837 * 92.02042 * 17 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4866 1.1673 0.0005 6 6 4.5455 0.1467 0.0078 7 6 5.4566 1.1648 -0.6918 8 8 6.8062 1.1695 -0.2221 9 6 7.7636 0.8187 -1.1057 10 1 7.4936 0.5513 -2.1166 11 6 9.0939 0.8014 -0.7159 12 7 9.4229 1.1277 0.5156 13 14 10.4194 0.3164 -1.9395 14 1 10.3955 1.2523 -3.0923 15 1 11.7484 0.3782 -1.2799 16 1 10.1683 -1.0664 -2.4191 17 6 4.5456 2.1878 0.0002 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.9499 -0.8400 0.0004 22 1 4.8830 -0.1216 1.0089 23 1 4.3143 -0.7232 -0.6069 24 1 5.3789 1.1610 -1.7791 25 1 10.3537 1.1160 0.7882 26 1 4.3142 3.0531 -0.6209 27 1 4.8822 2.4643 0.9994 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259877139.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:20 Heat of formation + Delta-G solvation = -16.363568 kcal Electronic energy + Delta-G solvation = -12603.479462 eV Core-core repulsion = 10171.016910 eV Total energy + Delta-G solvation = -2432.462552 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.05152 -38.00344 -35.33039 -34.34434 -31.69823 -29.06128 -26.05295 -25.33783 -24.43373 -21.18659 -19.49712 -18.00781 -17.54588 -16.05468 -15.97253 -15.01298 -14.60008 -14.26063 -13.55775 -13.33765 -12.94657 -12.61298 -12.40317 -12.18536 -11.53479 -11.41703 -11.03289 -10.81699 -10.34518 -9.97386 -9.53644 -9.34293 -9.10996 -8.24193 -8.09143 -6.05806 -3.71614 2.73793 3.26717 3.29122 3.32123 3.42077 4.11872 4.26245 5.03760 5.11720 5.35523 5.41396 5.48677 5.55247 5.71099 5.80467 5.89114 6.11388 6.16360 6.34652 6.52987 6.64133 7.35976 7.38345 8.28757 8.32530 8.79962 9.36817 9.98162 11.14064 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.089467 B = 0.006640 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.888389 B = 4215.679071 C = 4323.066246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.752 5.752 3 C 0.735 3.265 4 O -0.598 6.598 5 N -0.662 5.662 6 C 0.075 3.925 7 C 0.073 3.927 8 O -0.266 6.266 9 C -0.372 4.372 10 H 0.067 0.933 11 C 0.027 3.973 12 N -0.886 5.886 13 Si 0.928 3.072 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.277 1.277 17 C 0.119 3.881 18 H 0.072 0.928 19 H 0.055 0.945 20 H 0.055 0.945 21 H 0.397 0.603 22 H 0.088 0.912 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.261 0.739 26 H 0.073 0.927 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.004 -4.810 -1.961 12.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.408 5.408 3 C 0.438 3.562 4 O -0.477 6.477 5 N -0.402 5.402 6 C -0.049 4.049 7 C 0.012 3.988 8 O -0.179 6.179 9 C -0.451 4.451 10 H 0.085 0.915 11 C -0.172 4.172 12 N -0.527 5.527 13 Si 0.754 3.246 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.203 1.203 17 C -0.004 4.004 18 H 0.091 0.909 19 H 0.074 0.926 20 H 0.074 0.926 21 H 0.230 0.770 22 H 0.106 0.894 23 H 0.085 0.915 24 H 0.100 0.900 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.495 -3.953 -1.659 12.268 hybrid contribution 0.751 -0.826 -0.695 1.315 sum -10.744 -4.778 -2.354 11.992 Atomic orbital electron populations 1.21340 0.78422 1.01617 1.02057 1.44846 1.07344 1.07288 1.81305 1.15148 0.79408 0.84052 0.77634 1.90889 1.66858 1.30683 1.59314 1.48346 1.01730 1.13280 1.76839 1.23810 0.85348 0.93709 1.02029 1.23386 0.85666 0.93101 0.96692 1.85705 1.09472 1.85980 1.36722 1.20882 0.86156 1.45588 0.92433 0.91514 1.24977 0.96775 0.98657 0.96816 1.70000 1.17604 1.48730 1.16406 0.86007 0.80184 0.78722 0.79638 1.20249 1.20827 1.20283 1.23218 0.82377 0.93016 1.01820 0.90882 0.92592 0.92586 0.76975 0.89371 0.91546 0.89958 0.92921 0.90856 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.15 10.70 59.85 0.64 1.79 15 2 N -0.75 -10.00 5.72 -72.07 -0.41 -10.41 15 3 C 0.73 13.18 8.79 -86.92 -0.76 12.41 15 4 O -0.60 -12.85 17.12 5.29 0.09 -12.76 15 5 N -0.66 -11.78 3.69 -191.06 -0.71 -12.48 15 6 C 0.07 1.27 8.14 -8.51 -0.07 1.20 15 7 C 0.07 1.49 4.71 -26.23 -0.12 1.37 15 8 O -0.27 -7.07 9.84 -16.49 -0.16 -7.23 15 9 C -0.37 -10.25 9.86 30.88 0.30 -9.95 15 10 H 0.07 1.71 7.59 -52.49 -0.40 1.31 15 11 C 0.03 0.76 5.49 -17.51 -0.10 0.66 15 12 N -0.89 -26.65 13.67 55.48 0.76 -25.89 15 13 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 15 14 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 17 C 0.12 2.25 8.46 -8.52 -0.07 2.18 15 18 H 0.07 0.50 8.14 -51.93 -0.42 0.07 15 19 H 0.06 0.62 8.14 -51.93 -0.42 0.19 15 20 H 0.06 0.62 8.14 -51.93 -0.42 0.19 15 21 H 0.40 4.34 8.54 -40.82 -0.35 3.99 15 22 H 0.09 1.54 8.14 -51.93 -0.42 1.11 15 23 H 0.07 0.97 8.14 -51.93 -0.42 0.54 15 24 H 0.08 1.62 7.81 -51.93 -0.41 1.21 15 25 H 0.26 7.34 8.31 -40.82 -0.34 7.01 15 26 H 0.07 1.34 8.14 -51.93 -0.42 0.91 15 27 H 0.09 1.68 8.14 -51.93 -0.42 1.26 15 LS Contribution 246.30 15.07 3.71 3.71 Total: -1.00 -33.73 246.30 -5.17 -38.90 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -3.25 Total: 0.41 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -0.18 Total: 9.67 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.36 Total: -48.78 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.07 Total: -20.00 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -33.73 -5.17 -38.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259877139.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.539 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds